CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG98502
KRG98507
KRH46360
KRH46364
KRH56614

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25140.1	KRG93305	AT3G27960.1	21798944
AT2G25140.1	KRH56614	AT3G27960.1	21798944
AT2G25140.1	KRG98502	AT4G26630.1	25387881
AT2G25140.1	KRG98507	AT4G26630.1	25387881
AT2G25140.1	KRH46360	AT4G26630.1	25387881
AT2G25140.1	KRH46364	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g011380.2.1	Tomato	cytosol, plastid	23.04	73.17
CDY64721	Canola	cytosol	24.88	66.39
KRH61688	Soybean	mitochondrion	92.93	62.12
GSMUA_Achr9P22420_001	Banana	cytosol	80.49	59.34
VIT_04s0008g05870.t01	Wine grape	mitochondrion	83.87	56.76
KRH63249	Soybean	mitochondrion	16.28	54.64
CDY53470	Canola	mitochondrion	66.51	54.6
Bra032044.1-P	Field mustard	mitochondrion	66.51	54.53
AT2G25140.1	Thale cress	mitochondrion	80.34	54.25
Bra007816.1-P	Field mustard	mitochondrion	80.34	53.7
CDX76768	Canola	mitochondrion	80.18	53.65
CDY56280	Canola	mitochondrion	80.18	53.59
CDY68892	Canola	mitochondrion, plastid	67.9	53.32
EES06386	Sorghum	mitochondrion	77.27	50.81
Os02t0181900-01	Rice	mitochondrion	76.04	50.36
HORVU6Hr1G028690.1	Barley	mitochondrion	75.42	49.9
TraesCS6D01G135600.1	Wheat	golgi	75.42	49.55
TraesCS6B01G174500.1	Wheat	mitochondrion	75.42	49.55
TraesCS6A01G146400.1	Wheat	mitochondrion	75.42	49.55
KRH01254	Soybean	nucleus, plastid	72.66	48.56
KRH44979	Soybean	nucleus, plastid	72.5	48.46
KRG93616	Soybean	nucleus	71.28	47.44
KRH18417	Soybean	nucleus	71.12	47.34
KRH46928	Soybean	endoplasmic reticulum	8.29	45.38
KRH54672	Soybean	endoplasmic reticulum	44.24	38.25
KRH56831	Soybean	endoplasmic reticulum	49.62	35.46
KRH03117	Soybean	cytosol	21.97	31.5
KRH59753	Soybean	endoplasmic reticulum	43.78	31.01
KRH41069	Soybean	mitochondrion, plastid	43.78	31.01
KRH63851	Soybean	plastid	43.32	30.59
KRH54115	Soybean	plastid	43.32	30.59
KRH63903	Soybean	plastid	37.79	26.0
KRH54048	Soybean	plastid	37.17	25.47
Zm00001d008786_P001	Maize	plastid	5.68	20.79

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0JI83	InterPro:AAA+_ATPase	EMBL:ACUP02003419
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:Clp_ATPase_C	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G063200
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlants:KRH52355	ProteinID:KRH52355
ProteinID:KRH52355.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	PANTHER:PTHR11638	PANTHER:PTHR11638:SF86	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
UniParc:UPI0006ED797F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:4777642..4786997

Molecular Weight (calculated)

73472.7 Da

IEP (calculated)

5.667

GRAVY (calculated)

-0.315

Length

651 amino acids

Sequence
(BLAST)

001: MLWSFHVCLG KGARNKQGSQ LSWIDHKFVK LKVLISLDMG SLLAGAKYRG DFEERLKAVL KEVTASSGQI ILFIDEIHTV VGAGATSGAM DAGNLLKPML
101: GRGELRCIGA TTLKEYRKYI EKDPALERRF QQVFCSQPSV EVTISILRGL RERYELHHGV KISDSALVSA AVLADRYITE RFLPGKAIDL VDEAAAKLKM
201: EITSKPTELD EIDRAILKLE MEKLSLKNDT DKASKERLSK LENDLSLLKQ KQKELTELWD NEKVLTTRIR SIKEEIDRVN LEMEAAERDY DLNRAAELKY
301: GTLMSLQRQL EEAEKNLTDF RKSGQSLLGE EVTDLDITEI VSKWTGIPLS NLQQTEREKA GLSDPNRPIA SFMFMGPTGV GKTELAKALA GYLFNTENAL
401: VRIDMGEYME KHAVSRLIGA PPGYVGYEEG GQLTEVVRRR PYSVVLFDEI EKAHHDVFNI LLQLLDDGRI TDSQGRTISF TNCVVIMTSN IGSHYILDTL
501: RSTQDDKTAV YDQMKDKSLS WLEFMNRIDE YIVFQPLDSE QISKIVELQM ERVKNRLKQK KIDLHYTEEA VKLLGVLGFD PNFGARPVKR VIQQLVENEI
601: AMGVLRGYFK EEESIIVDAD VTPSGKERSP LNKLLIKKLD SSVADAMVVN D

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.