Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98502 | Soybean | nucleus | 69.39 | 76.71 |
| KRH46360 | Soybean | nucleus | 61.46 | 67.03 |
| KRG98507 | Soybean | nucleus | 60.97 | 66.94 |
| VIT_19s0015g00430.t01 | Wine grape | nucleus | 38.54 | 51.92 |
| PGSC0003DMT400037344 | Potato | endoplasmic reticulum, vacuole | 20.32 | 47.13 |
| CDX94304 | Canola | nucleus | 24.16 | 44.62 |
| Solyc07g065490.2.1 | Tomato | nucleus | 33.71 | 42.9 |
| PGSC0003DMT400057390 | Potato | extracellular, nucleus | 35.94 | 42.46 |
| Solyc10g006000.2.1 | Tomato | nucleus | 27.26 | 39.71 |
| AT5G55660.1 | Thale cress | nucleus | 36.93 | 38.3 |
| CDY06563 | Canola | nucleus | 31.6 | 37.12 |
| AT4G26630.1 | Thale cress | nucleus | 35.07 | 37.09 |
| CDX89318 | Canola | nucleus | 32.22 | 36.93 |
| KRH41110 | Soybean | nucleus | 21.31 | 35.32 |
| Bra026415.1-P | Field mustard | nucleus | 35.94 | 34.73 |
| Bra035582.1-P | Field mustard | nucleus | 33.71 | 34.26 |
| CDY28645 | Canola | nucleus | 33.46 | 34.05 |
| KRH63796 | Soybean | nucleus | 22.18 | 33.46 |
| CDY20754 | Canola | nucleus | 32.59 | 33.12 |
| KRH59791 | Soybean | nucleus | 21.56 | 33.08 |
| KRH54152 | Soybean | nucleus | 21.69 | 31.88 |
| Bra002880.1-P | Field mustard | endoplasmic reticulum | 34.08 | 31.79 |
| GSMUA_Achr9P09250_001 | Banana | endoplasmic reticulum, golgi | 12.64 | 31.78 |
| CDY17352 | Canola | extracellular, vacuole | 32.59 | 31.76 |
| Zm00001d013757_P010 | Maize | nucleus | 23.67 | 29.25 |
| EER91265 | Sorghum | nucleus | 23.17 | 28.99 |
| Zm00001d033159_P001 | Maize | nucleus | 15.99 | 28.86 |
| Os03t0596900-01 | Rice | nucleus | 25.03 | 28.73 |
| CDX97358 | Canola | nucleus | 34.32 | 22.84 |
| Bra010432.1-P | Field mustard | nucleus | 31.85 | 22.72 |
| TraesCS4B01G148100.1 | Wheat | nucleus | 24.78 | 20.58 |
| HORVU4Hr1G035250.1 | Barley | nucleus | 25.15 | 20.48 |
| TraesCS4A01G137900.1 | Wheat | nucleus | 24.29 | 20.04 |
| TraesCS4D01G153300.1 | Wheat | nucleus | 24.66 | 19.86 |
| OQU91413 | Sorghum | nucleus | 21.69 | 12.95 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100812080 | MapMan:35.2 | EMBL:ACUP02005340 | ncoils:Coil | InterPro:DEK_C |
| EnsemblPlantsGene:GLYMA_08G329200 | GO:GO:0003674 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006338 |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042393 |
| GO:GO:2000779 | UniProt:K7LAB8 | ProteinID:KRH46362.1 | ProteinID:KRH46363.1 | EnsemblPlants:KRH46364 | ProteinID:KRH46364 |
| ProteinID:KRH46364.1 | ProteinID:KRH46365.1 | ProteinID:KRH46366.1 | ProteinID:KRH46367.1 | PFAM:PF08766 | PANTHER:PTHR13468 |
| PANTHER:PTHR13468:SF8 | SUPFAM:SSF109715 | UniParc:UPI0002338E1A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr8:+:44695284..44711303
Molecular Weight (calculated)
91457.7 Da
IEP (calculated)
4.882
GRAVY (calculated)
-1.490
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEEPANEV SKTDSNGKSL QEKTLDETTE KKDLETDGGK VLENNGIKEN IVKEIEDKKA DGVEKVEEDK KIVVVKEAKE DKKEDGVKEA KEDKIEEGVE
101: EVKKDNKEDG VEEAKEDTKE YGVEEVKEDK KDGVEAVNED KKQDRVEEVE EDKEVDGVKE VIEDKEVDDV KEVKEDKEID GVKEVVEDKK GDELKEIEED
201: KKDDHISETD KMDEDTKVKE TIEGKQENEK VQAEKPEVDA MEVEGGIQEE ESDEKEKKDV AMEEDEDEDK DNIDKSKEEE KAEDSKGKKG SKKRGIGKID
301: GEKVKEKRTE PKKTEPRTPT IERPVRERKS VERLVASIDK DATKEFLIEK GRGTPLKNIP NVAFKLSRRK TEDTFKLLHT ILFGRRGKAV EIKSNISRFS
401: GFVWRDNEEK QRIKVKEKLD KCNKEKLLEF CDVLDITINK ATSRKEDIIA KLIDFLVAPH ATTTVLLAEK DKPSKGTKRK RVVKRGSSRS ATTSRRSVKS
501: QKKNEDSSVV RRKSTSDAED ESEEEERDEE NEEENENGVP NKSEDETPEK SESEDKSDSG SESEDTKEKK KPSKTSSTKK ESAKKSKIEK ITVATKTRSP
601: HKRTPKKASF NLSKSDDDSD ESPNPKVFSR KKKNEKGGKQ KTDDDSDESP NPKVFSRKKK NEKGGKQKID DDSDESPNPK VFSRKKNEKG GKQKRSTPTK
701: STSKEKTEKV TKGKGKKKEK SSPSDNQLRD AICKILKEVD FNTATFTDIL KQLAKQFDMD LTPKKASIKL MIQEELTKLA DEADDEEDGE EDAEKDEAPS
801: TGQEVKA
101: EVKKDNKEDG VEEAKEDTKE YGVEEVKEDK KDGVEAVNED KKQDRVEEVE EDKEVDGVKE VIEDKEVDDV KEVKEDKEID GVKEVVEDKK GDELKEIEED
201: KKDDHISETD KMDEDTKVKE TIEGKQENEK VQAEKPEVDA MEVEGGIQEE ESDEKEKKDV AMEEDEDEDK DNIDKSKEEE KAEDSKGKKG SKKRGIGKID
301: GEKVKEKRTE PKKTEPRTPT IERPVRERKS VERLVASIDK DATKEFLIEK GRGTPLKNIP NVAFKLSRRK TEDTFKLLHT ILFGRRGKAV EIKSNISRFS
401: GFVWRDNEEK QRIKVKEKLD KCNKEKLLEF CDVLDITINK ATSRKEDIIA KLIDFLVAPH ATTTVLLAEK DKPSKGTKRK RVVKRGSSRS ATTSRRSVKS
501: QKKNEDSSVV RRKSTSDAED ESEEEERDEE NEEENENGVP NKSEDETPEK SESEDKSDSG SESEDTKEKK KPSKTSSTKK ESAKKSKIEK ITVATKTRSP
601: HKRTPKKASF NLSKSDDDSD ESPNPKVFSR KKKNEKGGKQ KTDDDSDESP NPKVFSRKKK NEKGGKQKID DDSDESPNPK VFSRKKNEKG GKQKRSTPTK
701: STSKEKTEKV TKGKGKKKEK SSPSDNQLRD AICKILKEVD FNTATFTDIL KQLAKQFDMD LTPKKASIKL MIQEELTKLA DEADDEEDGE EDAEKDEAPS
801: TGQEVKA
001: MATETLELKT PQLADTVAVT EKDTETKKKD EVEKDEAMEE KGEEIDGEKV KSPVTPVSER PIRERKRTGR YVIDTPPRSS GNKPLSITQG RGTRLKEIPN
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
101: VAYKLSKRKP DDNLFLLHTI LYGKKAKAQM LKKNIGQFSG FVWSEQEEEK QRAKAKEKLD KCIKEKLIDF CDVLDIPVNK STVKKEELAV RVLEFLVCPK
201: ATRDILLADS EKETKKRKKS TSKNVTSGES SHVPAKRRRQ AKKQEQPTET EGNGESDVGS EGTNDSNGED DVAPEEENNK SEDTETEDEK DKAKEKTKST
301: DKKRLSKRTK KEKPAAEEEK SIKGSAKSSR KSFRQVDKST TSSSKKQKVD KDDSSKEKGK TQTSKPQAKG SKDQGQSRKK GKKEPTRKEL HVVVTKILKE
401: VDFNTATLSD ILRKLGSHFG IDLMHRKAEV KDIITDAINE MSDDDDEKEE DTEDEGEKEG KD
Arabidopsis Description
At3g48710 [Source:UniProtKB/TrEMBL;Acc:Q9SMM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.