CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72466	Soybean	cytosol, peroxisome, plastid	78.95	87.6
KRH52957	Soybean	endoplasmic reticulum	83.89	83.65
KRH62244	Soybean	endoplasmic reticulum	82.87	82.63
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	78.81	78.92
Solyc04g076380.2.1	Tomato	plastid	76.63	76.97
PGSC0003DMT400024163	Potato	endoplasmic reticulum	76.34	76.68
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	74.89	74.24
CDX92639	Canola	vacuole	74.46	73.81
CDY34288	Canola	endoplasmic reticulum	74.46	73.81
CDY03447	Canola	endoplasmic reticulum	74.17	73.53
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	73.73	73.41
Bra013811.1-P	Field mustard	endoplasmic reticulum	74.02	73.38
Bra019223.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	71.41	73.21
Bra013810.1-P	Field mustard	endoplasmic reticulum	73.0	72.48
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	72.57	72.05
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	61.1	70.99
KRH19026	Soybean	mitochondrion	66.47	64.78
KRH02867	Soybean	endoplasmic reticulum	66.47	64.78
KRH46914	Soybean	cytosol, nucleus, peroxisome	14.51	28.49
KRH01775	Soybean	cytosol, mitochondrion	24.67	27.29

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6	EMBL:ACUP02009023
InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf
EnsemblPlantsGene:GLYMA_14G182100	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003958	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	UniProt:I1MB07	InterPro:IPR008254	InterPro:IPR017927
InterPro:IPR023173	InterPro:IPR029039	EnsemblPlants:KRH16854	ProteinID:KRH16854	ProteinID:KRH16854.1	HAMAP:MF_03212
InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	InterPro:P450R	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667
PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384
PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
UniParc:UPI0001B63D30	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr14:-:44515709..44527932

Molecular Weight (calculated)

76508.7 Da

IEP (calculated)

4.948

GRAVY (calculated)

-0.285

Length

689 amino acids

Sequence
(BLAST)

001: MASNSELVRT VVESVLGVSV SDSVMVIAAT SVALVIGLLV FVWRKSSDRS KEQKPLAVPK LLVKEEEEDE VDAGSGKTRV AIFFGTQTGT AEGFAKALAE
101: EIKARYEKAA VKVADLDDYA MDDDQYEEKL KKESLAFFML ATYGDGEPTD NAARFYKWFT EGKDERGIWL QQLTYGVFGL GNRQYEHFNK IGKIVDEELS
201: EQGAKRLVPL GLGDDDQSIE DDFVAWKESL WSELDQLLRD EDDVNTVSTP YKAAIPEYRV VIHDSTVTSC NDNHLNVANG NAVFDIHHPC RVNIAAQREL
301: HKPESDRSCI HLEFDISGTG IIYETGDHVG VFAENGDETV EEAGKLLGQD LDLVFSIHTN NEDGTPLGSS LPPPFPGPCT LRFALAHYAD LLNPPRKASL
401: VALAAHTSEP SEADRLTFLS SPQGKDEYSK WLVGSQRSLL EVMAEFPSAK PPLGVFFAAV APHLQPRYYS ISSSPRFSPQ KVHVTCALVC GPTPTGRIHK
501: GVCSTWMKNA IPLEKSRDCS WAPIFIRTSN FKLPADHSIP IIMVGPGTGL APFRGFLQER LALKEDAVQL GPALLFFGCR NRQMDFIYED ELKNFMEQGA
601: LSELIVTFSR EGPEKEYVQH KMMDKAANLW NLISQGGYLY VCGDAKGMAR DVHRTLHTIV QQQENVDSSK AEAIVKKLQM DGRYLRDVW

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.