CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34288	Canola	endoplasmic reticulum	96.83	96.83
CDX92639	Canola	vacuole	92.23	92.23
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	91.94	91.94
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	88.78	89.16
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	88.63	88.76
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	74.53	87.35
Solyc04g076380.2.1	Tomato	plastid	74.68	75.66
PGSC0003DMT400024163	Potato	endoplasmic reticulum	74.1	75.07
KRH52957	Soybean	endoplasmic reticulum	74.39	74.82
KRH62244	Soybean	endoplasmic reticulum	74.1	74.53
KRH16854	Soybean	endoplasmic reticulum	73.53	74.17
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	72.37	73.11
KRH72466	Soybean	cytosol, peroxisome, plastid	64.03	71.66
CDY14183	Canola	cytosol, peroxisome, plastid	63.17	63.07
CDY28169	Canola	plastid	62.59	62.5
CDY51656	Canola	plastid	63.17	62.18
CDX72222	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	63.31	62.15
CDY03543	Canola	plastid	63.31	61.97
CDX68634	Canola	plastid	62.88	61.38
CDX74264	Canola	mitochondrion	24.6	27.54
CDX91986	Canola	mitochondrion	24.32	27.04
CDY34997	Canola	mitochondrion	8.06	25.81
CDY12377	Canola	plastid	8.2	20.36
CDY06413	Canola	mitochondrion, nucleus	24.17	16.95

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6	GO:A0A078EQV1
EnsemblPlants:CDY03447	ProteinID:CDY03447	ProteinID:CDY03447.1	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like
InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003958	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00116101001	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039
HAMAP:MF_03212	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	InterPro:P450R	PFAM:PF00175	PFAM:PF00258
PFAM:PF00667	PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
UniParc:UPI0004EDEDB9	SEG:seg	:	:	:	:

Description

BnaC01g16350D

Coordinates

chrLK031943:+:505821..510069

Molecular Weight (calculated)

76681.8 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.249

Length

695 amino acids

Sequence
(BLAST)

001: MSSALYASGV FKEVKSILGA FLGDSVSDDV VLVIATTSLA LVVGFVVLVW KKTTSDQSQE LKPLVIPKSL MAKDEDEEDV DLGSGKERVS IFFGTQTGTA
101: EGFAKALAEE IKARYEKAAV KVIDLDDYAA DDDQYEEKLK KETLSFFCVA TYGDGEPTDN AARFYKWFTE GTEGDIRLQQ LTYGVFALGN RQYEHFNKIG
201: IVLDEELSKK GAKRLIEVGL GDDDQSIEDD FNAWKESLWP ELDKLLRDED DTSVATPYTA AIPEYRVMIH DPSFISEKSV DSSVANGNSA IDIHHPRRVN
301: VAVQRELHTP ESDRSCIHLE FDICTSITYE TGDHVGVYAE NHAEIVEEAA KLLGHSLDLV FSIHADKEDG SPLGSSLPPP FPGPCTLGTA LAKYADLLNP
401: PRKSALVALA AYATEPSEAK KLKHLTSPDG KDEYSQWIVA SQRSLLEVMA AFPSAKPPLG VFFAAIAPRL QPRYYSISSS PRLAPNRVHV TCALVYGPTP
501: TGRIHKGLCS TWMKNAVPAE KSRECSGAPI FIRASNFKLP SNPSTPIVMV GPGTGLAPFR GFLQERMALK EDGVELGPSL LFFGCRNRRM DFIYEDELNN
601: FVDKGVISEL IVAFSREGAQ KEYVQHKIVE KAAQVWNLIK EEGYLYVCGD AKGMARDVHR TLHTIVQEQE GVSSSEAEAI VKKLQTEGRY LRDVW

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.