CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 5
extracellular 2
golgi 2
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52957	Soybean	endoplasmic reticulum	93.78	93.78
KRH16854	Soybean	endoplasmic reticulum	82.63	82.87
KRH72466	Soybean	cytosol, peroxisome, plastid	72.36	80.52
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	79.16	79.51
Solyc04g076380.2.1	Tomato	plastid	77.86	78.43
PGSC0003DMT400024163	Potato	endoplasmic reticulum	77.86	78.43
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	76.56	76.12
CDX92639	Canola	vacuole	75.98	75.54
Bra019223.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	73.23	75.3
CDY34288	Canola	endoplasmic reticulum	74.96	74.53
CDY03447	Canola	endoplasmic reticulum	74.53	74.1
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	74.1	73.99
Bra013811.1-P	Field mustard	endoplasmic reticulum	74.38	73.96
Bra013810.1-P	Field mustard	endoplasmic reticulum	74.24	73.92
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	73.81	73.49
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	62.66	73.02
KRH02867	Soybean	endoplasmic reticulum	68.45	66.9
KRH19026	Soybean	mitochondrion	68.31	66.76
KRH46914	Soybean	cytosol, nucleus, peroxisome	14.62	28.77
KRH01775	Soybean	cytosol, mitochondrion	25.33	28.09

Protein Annotations

Gene3D:1.20.990.10	EntrezGene:100798676	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6
UniProt:A0A0R4J338	EMBL:ACUP02002227	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	EnsemblPlantsGene:GLYMA_04G095500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003958	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR008254
InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	EnsemblPlants:KRH62244	ProteinID:KRH62244	ProteinID:KRH62244.1
HAMAP:MF_03212	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	InterPro:P450R	PFAM:PF00175	PFAM:PF00258
PFAM:PF00667	PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI0001D1DA08	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:8498631..8509433

Molecular Weight (calculated)

76560.8 Da

IEP (calculated)

5.087

GRAVY (calculated)

-0.262

Length

691 amino acids

Sequence
(BLAST)

001: MASNSDLVRA VESLLGVSLA DSVSDSLLLI ATTSAAVIIG LLVFLWKKSS DRSKEVKPVI VPKGLPKDED DEIDVADGKT KVTIFFGTQT GTAEGFAKAL
101: AEEIKARYDK AAVKVVDLDD YAADDDQYEE KLKKETVAFF MLATYGDGEP TDNAARFYKW FTEGKDERGT SLQQLTYGVF GLGNRQYEHF NKIGKVVDEE
201: LSEQGAKRLV TLGLGDDDQS IEDDFSAWKE TLWPELDKLL RNEDDANTVS TPYTAAILEY RVVIHDPTVT SSYDNHINVA NGNAVFDIHH PCRANVAIQR
301: ELHKPESDRS CIHLEFDISG TGITYETGDH VGVYADNCNE TVEEAGKLLG QNLDLLFSLH TDKEDGTSLG GSLLPPFPGP CTLRTALARY ADLLNPPRKA
401: ALVALAAHAS ELSEAERLKF LSSPQGKDEY SKWVVGSQRS LLEVMAEFPS AKPPLGVFFA AVAPRLQPRY YSISSSPRFA PQRVHVTCAL VYGPTPTGRI
501: HKGVCSTWMK NAIPLEKSPD CCWAPIFIRP SNFKLPVDHS IPIIMVGPGT GLAPFRGFLQ ERFALKEDGV QLGPAILFFG CRNRRMDFIY EDELKNFVEQ
601: GSLSELIVAF SREGAEKEYV QHKMMDQAAH LWSLISQGGY LYVCGDAKGM ARDVHRILHT IVQQQENVDS TKAEAIVKKL QMDGRYLRDV W

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [cytosol,endoplasmic reticulum,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.