CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
endoplasmic reticulum 3
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

mitochondrion: 25806999
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 25806999 doi

AH Kamal, S Komatsu

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02867	Soybean	endoplasmic reticulum	95.05	95.05
VIT_11s0052g00880.t01	Wine grape	cytosol, endoplasmic reticulum, peroxisome	80.62	80.85
CDY28169	Canola	plastid	74.4	75.57
GSMUA_AchrUn_...	Banana	plastid	74.82	75.25
Solyc07g019460.2.1	Tomato	cytosol	75.67	74.83
CDX72222	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	74.82	74.72
CDY51656	Canola	plastid	74.54	74.65
PGSC0003DMT400035801	Potato	plastid	75.25	74.41
Bra010296.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	74.4	74.4
GSMUA_Achr1P23470_001	Banana	cytosol, peroxisome, plastid	73.55	74.29
Bra011174.1-P	Field mustard	cytosol, plastid	70.58	74.26
Bra024095.1-P	Field mustard	endoplasmic reticulum, plastid	69.87	73.95
CDX68634	Canola	plastid	74.26	73.74
CDY14183	Canola	cytosol, peroxisome, plastid	72.42	73.56
CDY03543	Canola	plastid	73.55	73.24
GSMUA_Achr2P04920_001	Banana	endoplasmic reticulum	71.85	73.2
GSMUA_Achr11P...	Banana	endoplasmic reticulum	71.57	72.91
Os08t0243500-01	Rice	cytosol	66.76	72.5
Zm00001d021385_P002	Maize	endoplasmic reticulum, peroxisome, plastid	72.28	72.07
TraesCS5D01G370100.1	Wheat	peroxisome	71.57	71.98
TraesCS5B01G363800.1	Wheat	peroxisome	71.43	71.94
TraesCS5A01G361100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	71.43	71.83
EER99347	Sorghum	endoplasmic reticulum, peroxisome, plastid	71.71	71.81
GSMUA_Achr7P05040_001	Banana	cytosol, endoplasmic reticulum, plastid	71.57	71.77
Zm00001d051072_P001	Maize	plastid	20.65	71.22
Os09t0558900-01	Rice	golgi, peroxisome, plastid	71.71	71.01
TraesCS2B01G534200.1	Wheat	endoplasmic reticulum	69.31	70.81
Os04t0653400-01	Rice	plasma membrane	69.45	70.65
TraesCS2D01G506600.1	Wheat	endoplasmic reticulum	68.88	70.38
EES11568	Sorghum	plastid	69.02	70.32
EES13592	Sorghum	cytosol, peroxisome, plastid	70.01	70.11
Zm00001d026483_P001	Maize	plasma membrane	68.74	70.03
TraesCS2A01G505800.2	Wheat	endoplasmic reticulum	69.02	69.71
Zm00001d002024_P002	Maize	endoplasmic reticulum, peroxisome, plastid	68.74	69.13
Zm00001d050218_P001	Maize	plasma membrane	68.32	68.8
Zm00001d024412_P002	Maize	plastid	67.75	68.53
KRH62244	Soybean	endoplasmic reticulum	66.76	68.31
KRH52957	Soybean	endoplasmic reticulum	66.34	67.87
AT4G30210.3	Thale cress	plastid	73.97	67.57
KRH16854	Soybean	endoplasmic reticulum	64.78	66.47
Zm00001d043355_P001	Maize	cytosol	15.56	64.33
KRH72466	Soybean	cytosol, peroxisome, plastid	55.87	63.61
Zm00001d028379_P001	Maize	endoplasmic reticulum	15.84	60.87
HORVU6Hr1G074580.1	Barley	cytosol	2.83	54.05
Zm00001d032090_P001	Maize	plastid	14.71	32.6
CDY34997	Canola	mitochondrion	9.48	30.88
Bra021223.1-P	Field mustard	mitochondrion	9.19	30.52
KRH46914	Soybean	cytosol, nucleus, peroxisome	14.0	28.21
KRH01775	Soybean	cytosol, mitochondrion	24.75	28.09

Protein Annotations

Gene3D:1.20.990.10	EntrezGene:100800640	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6
UniProt:A0A0R4J4Q1	EMBL:ACUP02008159	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth
InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	EnsemblPlantsGene:GLYMA_13G096500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003958	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR008254
InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	EnsemblPlants:KRH19026	ProteinID:KRH19026	ProteinID:KRH19026.1
HAMAP:MF_03212	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	InterPro:P450R	PFAM:PF00175	PFAM:PF00258
PFAM:PF00667	PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI0001D1DA09	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:21139359..21145152

Molecular Weight (calculated)

78364.9 Da

IEP (calculated)

5.356

GRAVY (calculated)

-0.308

Length

707 amino acids

Sequence
(BLAST)

001: MQDSGSMKIS PLDLMSAIIK GKLDPSNVSS SSSNAAAAVL LENRQFLMLL TTSVAVLVGC FVVFIWRRSS SPKAKPLEPP KRVIEKLPEI EVDDGTKKVT
101: IFFGTQTGTA EGFAKAIAEE AKARYDKATF RVVDMDDYAA DDDEYEERFK KETHALFFLA TYGDGEPTDN AARFYKWFTE GGEKGEGWLE NLHYGVFGLG
201: NRQYEHFNKV AKVVDDMLAE QGGKRLVPVG LGDDDQCIED DFTAWKEELW PALDDLLRDE DDTTVSTPYT AAVLEYRVVI HDPLEASVDE KKWHNVNGHA
301: IVDAQHPVRA NVAVRKELHT PASDRSCTHL EFDISGTGVT YETGDHVGVY CENLSETVEE AIRLIGLSPD TYFSIHTDDE DGKPLGGSSL PPTFPPCTLR
401: KALAQYADVL SSPKKSALLA LAAHASDPSE ADRLRHLASP AGKDEYSEWV ITSQRSLLEV MAEFPSAKPP IGVFFAAVAP RLQPRFYSIS SSPRMVPNRI
501: HVTCALVHDK MPTGRIHKGV CSTWMKNSVP LEKSQDCSWA PIFVRTSNFR LPADNKVPII MIGPGTGLAP FRGFLQERLA LKGGGAELGP SVLFFGCRNR
601: QMDYIYEDEL NHFVNTGALS ELILAFSREG PTKEYVQHKM MEKASEIWSM ISQGAYIYVC GDAKGMARDV HRALHTILQE QGSLDSSKAE SMVKNLQTTG
701: RYLRDVW

Best Arabidopsis Sequence Match ( AT4G30210.3 )
(BLAST)

001: MKNMMNYKLK LCSVSKNSKG VSLSPTPHLT KPPTIHTERD LLLPSSSFFF LLLSSSSYNI YNAMSSSSSS STSMIDLMAA IIKGEPVIVS DPANASAYES
101: VAAELSSMLI ENRQFAMIVT TSIAVLIGCI VMLVWRRSGS GNSKRVEPLK PLVIKPREEE IDDGRKKVTI FFGTQTGTAE GFAKALGEEA KARYEKTRFK
201: IVDLDDYAAD DDEYEEKLKK EDVAFFFLAT YGDGEPTDNA ARFYKWFTEG NDRGEWLKNL KYGVFGLGNR QYEHFNKVAK VVDDILVEQG AQRLVQVGLG
301: DDDQCIEDDF TAWREALWPE LDTILREEGD TAVATPYTAA VLEYRVSIHD SEDAKFNDIN MANGNGYTVF DAQHPYKANV AVKRELHTPE SDRSCIHLEF
401: DIAGSGLTYE TGDHVGVLCD NLSETVDEAL RLLDMSPDTY FSLHAEKEDG TPISSSLPPP FPPCNLRTAL TRYACLLSSP KKSALVALAA HASDPTEAER
501: LKHLASPAGK DEYSKWVVES QRSLLEVMAE FPSAKPPLGV FFAGVAPRLQ PRFYSISSSP KIAETRIHVT CALVYEKMPT GRIHKGVCST WMKNAVPYEK
601: SENCSSAPIF VRQSNFKLPS DSKVPIIMIG PGTGLAPFRG FLQERLALVE SGVELGPSVL FFGCRNRRMD FIYEEELQRF VESGALAELS VAFSREGPTK
701: EYVQHKMMDK ASDIWNMISQ GAYLYVCGDA KGMARDVHRS LHTIAQEQGS MDSTKAEGFV KNLQTSGRYL RDVW

Arabidopsis Description

ATR2P450 reductase 2 [Source:TAIR;Acc:AT4G30210]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.