CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 5
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62244	Soybean	endoplasmic reticulum	93.78	93.78
KRH16854	Soybean	endoplasmic reticulum	83.65	83.89
KRH72466	Soybean	cytosol, peroxisome, plastid	71.35	79.39
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	78.87	79.22
Solyc04g076380.2.1	Tomato	plastid	78.15	78.72
PGSC0003DMT400024163	Potato	endoplasmic reticulum	77.86	78.43
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	75.83	75.4
CDX92639	Canola	vacuole	75.54	75.11
CDY34288	Canola	endoplasmic reticulum	74.96	74.53
Bra019223.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	72.36	74.4
CDY03447	Canola	endoplasmic reticulum	74.82	74.39
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	74.1	73.99
Bra013811.1-P	Field mustard	endoplasmic reticulum	74.38	73.96
Bra013810.1-P	Field mustard	endoplasmic reticulum	73.23	72.91
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	72.65	72.33
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	61.79	72.01
KRH19026	Soybean	mitochondrion	67.87	66.34
KRH02867	Soybean	endoplasmic reticulum	67.73	66.2
KRH46914	Soybean	cytosol, nucleus, peroxisome	14.62	28.77
KRH01775	Soybean	cytosol, mitochondrion	25.18	27.93

Protein Annotations

Gene3D:1.20.990.10	EntrezGene:100781568	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6
EMBL:ACUP02003444	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase
InterPro:Flavoprotein-like_sf	EnsemblPlantsGene:GLYMA_06G097200	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003958
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005789	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	UniProt:I1K9R6	InterPro:IPR008254
InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	EnsemblPlants:KRH52957	ProteinID:KRH52957	ProteinID:KRH52957.1
ProteinID:KRH52958.1	HAMAP:MF_03212	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	InterPro:P450R	PFAM:PF00175
PFAM:PF00258	PFAM:PF00667	PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902
PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000233AA49	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:7675377..7683688

Molecular Weight (calculated)

76725.8 Da

IEP (calculated)

4.984

GRAVY (calculated)

-0.295

Length

691 amino acids

Sequence
(BLAST)

001: MPSNSDLVRA VESLLGVSLA DSVSDSLLLI ATTSAALIIG LLVFLWKKSS DRSKELKPVI VPKGLPKDDD DEVDVADGKT KVTIFFGTQT GTAEGFAKAL
101: AEEIKARYDK AAVKVVDLDD YAADDDQYEE KLKKETLAFF MLATYGDGEP TDNAARFYKW FTEGKDERGT WLQHLTYGVF GLGNRQYEHF NKIGKVVDED
201: LSEQGAKRLV TFGLGDDDQS IEDDFSAWKE TLWPELDQLL RDEDDANTVS TPYTAAILEY RVVIHDPTFT SSYDNHVTVA NGNAVFDIHH PCRVNVAVQR
301: ELHKPESDRS CIHLEFDISG TGLTYETGDH VGVYADNCDE TVEETGKLLG QNLDLLFSLH TDKEDGTSLG GSLLPPFPGP CTLRTALARY ADLLNPPRKA
401: ALVALASHAS EPSEAERLKF LSSPQGKDEY SKWVVGSQRS LLEVMAEFPS AKPPLGVFFA AVAPRLQPRY YSISSSPRFA PQRVHVTCAL VYGPTPTGRI
501: HKGVCSTWMK NAIPLEKSPD CSWAPIFIRP SNFKLPVDHS IPIIMVGPGT GLAPFRGFLQ ERFALKEAGV QQGPAILFFG CRNRRLDFIY EEELKNFVEQ
601: GSLSELIVAF SREGAEKEYV QHKMMDQAAQ LWSLISQGGY LYVCGDAKGM ARDVHRTLHT IVQQQENVDS TKAEAIVKKL QMDGRYLRDV W

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.