Factsheet for PGSC0003DMT400024163

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
endoplasmic reticulum 4
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076380.2.1	Tomato	plastid	98.4	98.4
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	78.57	78.34
KRH52957	Soybean	endoplasmic reticulum	78.43	77.86
KRH62244	Soybean	endoplasmic reticulum	78.43	77.86
KRH16854	Soybean	endoplasmic reticulum	76.68	76.34
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	75.22	74.24
CDY03447	Canola	endoplasmic reticulum	75.07	74.1
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	74.64	73.99
CDX92639	Canola	vacuole	74.93	73.96
CDY34288	Canola	endoplasmic reticulum	74.78	73.81
Bra013811.1-P	Field mustard	endoplasmic reticulum	74.64	73.67
Bra019223.1-P	Field mustard	cytosol, endoplasmic reticulum, plastid	71.72	73.21
KRH72466	Soybean	cytosol, peroxisome, plastid	66.18	73.11
Bra013810.1-P	Field mustard	endoplasmic reticulum	73.18	72.33
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	72.74	71.9
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	61.52	71.16
PGSC0003DMT400035801	Potato	plastid	66.91	64.2
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	24.2	26.35

Protein Annotations

Gene3D:1.20.990.10	EntrezGene:102604882	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6
InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003958	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005829
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009698	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0010181	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0019748	GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927
InterPro:IPR023173	InterPro:IPR029039	UniProt:M1AJK1	HAMAP:MF_03212	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd
InterPro:P450R	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667	EnsemblPlantsGene:PGSC0003DMG400009340	PGSC:PGSC0003DMG400009340
EnsemblPlants:PGSC0003DMT400024163	PIRSF:PIRSF000208	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI0002951887	RefSeq:XP_006338052.1	SEG:seg	:	:

Description

Cytochrome reductase [Source:PGSC_GENE;Acc:PGSC0003DMG400009340]

Coordinates

chr4:-:65040333..65047233

Molecular Weight (calculated)

75964.9 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.292

Length

686 amino acids

Sequence
(BLAST)

001: MESSSELLRS IESALGVSLG SDTVLVLLTT SFAVIVGLVV FFLKRSSDRS KEVKPVVFPK SLHVEPEEET ELEPGKVKVT VFFGTQTGTA EGFAKALSEE
101: IKARYEKAVV KVVDMDDYAA DDDIYEEKLK KETVAFFMVA TYGDGEPTDN AARFYKWFTE GQERGAWLQN LSYGVFALGN RQYEHFNKIG KVIDEQMSEQ
201: GAKRLVPVGL GDDDQCIEDD FAAWREQLWP ELDQILRDED DANSAATPYT AAIPEYRLVI HDTTMSLEDK HAGMANGNTT YDIHHPCKVN VAVQRELHTP
301: ESDRSCIHLE FDISGTGISY ETGDHVGVYA ENSEDTVEEA ARLLGQSLDL IFSIHTDKED GTAGGGSLPP PFPGPCTLRA ALARYADLLN PPRKATLVAL
401: ATHAAEPSEA EKLKFLASPQ GKDEYSQWIV ASQRSLIEVM SEFPSAKPPL GVFFAAVAPR LQPRYYSISS SPRFAPARVH VTSALVYGPT PTGRIHKGVC
501: STWMKNAVPL EKSHNCSSAP IFIRPSNFKL PADPSIPIVM VGPGTGLAPF RGFLQERAAL KEDGAQLGPA LLFFGCRNRR MDFIYEEELQ SFVDQGVISE
601: LIIAFSREGP QKEYVQHKMM EKASHVWSLI SQEGYLYVCG DAKGMARDVH RTLHTIVQEQ ENADSSKAEA VVKKLQMDGR YLRDVW

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.