Factsheet for PGSC0003DMT400033003

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085820.2.1	Tomato	cytosol	94.44	94.44
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	68.41	68.2
KRH01775	Soybean	cytosol, mitochondrion	67.14	67.9
AT3G02280.2	Thale cress	mitochondrion	64.6	65.33
Bra001039.1-P	Field mustard	cytosol, mitochondrion	64.29	65.32
CDX91986	Canola	mitochondrion	64.29	64.8
CDX74264	Canola	mitochondrion	63.81	64.73
GSMUA_Achr1P11640_001	Banana	cytosol	59.05	62.52
Os01t0733600-01	Rice	cytosol	59.68	60.06
TraesCS3D01G280300.1	Wheat	plastid	58.41	58.04
EES03571	Sorghum	cytosol, nucleus, peroxisome, plastid	58.41	57.95
TraesCS3B01G314200.1	Wheat	cytosol	57.94	57.84
HORVU3Hr1G069620.2	Barley	plasma membrane	57.46	57.55
TraesCS3A01G280500.2	Wheat	plastid	58.41	57.41
KRH46914	Soybean	cytosol, nucleus, peroxisome	31.75	56.98
TraesCS6A01G158200.1	Wheat	cytosol, nucleus, peroxisome	50.95	56.51
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	54.92	55.01
TraesCS1D01G227800.1	Wheat	cytosol, peroxisome, plastid	53.33	54.9
TraesCS3B01G100500.1	Wheat	plastid	55.24	54.55
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	44.6	53.73
TraesCS3A01G085300.1	Wheat	cytosol, nucleus, peroxisome	55.24	53.37
CDY06413	Canola	mitochondrion, nucleus	59.68	37.94
PGSC0003DMT400024163	Potato	endoplasmic reticulum	26.35	24.2
PGSC0003DMT400035801	Potato	plastid	25.87	22.8

Protein Annotations

Gene3D:1.20.990.10	EntrezGene:102605269	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:7.11.3.1.1.2
InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf
GO:GO:0000003	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003958	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0010181	GO:GO:0016043	GO:GO:0016226	GO:GO:0016491	GO:GO:0016651
GO:GO:0050660	GO:GO:0050661	GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173
InterPro:IPR029039	UniProt:M1AYG0	HAMAP:MF_03178	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:NDOR1	InterPro:OxRdtase_FAD/NAD-bd
PFAM:PF00175	PFAM:PF00258	PFAM:PF00667	EnsemblPlantsGene:PGSC0003DMG400012672	PGSC:PGSC0003DMG400012672	EnsemblPlants:PGSC0003DMT400033003
PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF10
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI000294A9F5	RefSeq:XP_006363123.1
SEG:seg	:	:	:	:	:

Description

Nadph-cytochrome P450 oxydoreductase [Source:PGSC_GENE;Acc:PGSC0003DMG400012672]

Coordinates

chr2:+:41048605..41058121

Molecular Weight (calculated)

70977.5 Da

IEP (calculated)

6.029

GRAVY (calculated)

-0.333

Length

630 amino acids

Sequence
(BLAST)

001: MVMEEKPKKL LILYASETGN AIDAAERLGR EAERRGCPVL LLSVDDFDPS SLPDQEIVIF VVSTTGQGDN PDSIKVFWKF LLQRNLTQNW LSRVNYAVFG
101: LGDSGYQKYN FVAKKLDKRL SDLGATAVVE RGLGDDQHSS GYEGALDPWM STLWKALYQK DPKLFPKGPE LMTSNMSLMD QPKVQITYHD VVEGTSNFSS
201: IPDVKLLEMQ IESTRFILPG KLAGKYSPEC FLKMVKNDPL SKAGSGKDVR HFEFEAVSSS IEYEVGDVVH ILPGQDAAAV DAFIKRCNLN PESYIQVQVN
301: DNKENEQSYD LRNTLKVPVR LKTFVELAMD VASASPRRYF FEVMSYFATA EHEKERLQYF ASPEGRDDLY EYNQKERRTV LEVLDDFPSV QMPFEWLVQL
401: VPPLKTRAFS ISSSHSAHPN QVHLTVSVVS WTTPYKRKRT GLCSSWLAEL DPQKSGLIPA WFQKGSLPSP PPSLPLILIG PGTGCAPFRG FVEERALQSQ
501: SGPTAPILFF FGCRNEENDF LYRDFWLFHS QKGGVLSEEK GGGFFVAFSR DQQQKVYVQH KMREESFKIW NLLTEGAAVY VAGSANKMPS DVLLAFEEIV
601: SKEGGVPKEA AVRWLRALEK AGKYHVEAWS

Best Arabidopsis Sequence Match ( AT3G02280.3 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.