Factsheet for TraesCS6A01G158200.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G280500.2	Wheat	plastid	75.35	66.77
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	70.77	63.91
Os01t0733600-01	Rice	cytosol	69.72	63.26
EES03571	Sorghum	cytosol, nucleus, peroxisome, plastid	69.54	62.2
TraesCS3A01G085300.1	Wheat	cytosol, nucleus, peroxisome	70.25	61.2
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	51.23	55.64
GSMUA_Achr1P11640_001	Banana	cytosol	58.1	55.46
AT3G02280.2	Thale cress	mitochondrion	56.69	51.69
Bra001039.1-P	Field mustard	cytosol, mitochondrion	55.99	51.29
CDX91986	Canola	mitochondrion	56.34	51.2
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	56.51	50.95
CDX74264	Canola	mitochondrion	55.63	50.89
KRH01775	Soybean	cytosol, mitochondrion	55.63	50.72
Solyc02g085820.2.1	Tomato	cytosol	55.99	50.48
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	55.63	50.0
KRH46914	Soybean	cytosol, nucleus, peroxisome	26.06	42.17
CDY06413	Canola	mitochondrion, nucleus	51.06	29.26
TraesCS5A01G361100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	28.87	23.33
TraesCS2A01G505800.2	Wheat	endoplasmic reticulum	28.7	23.29

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:7.11.3.1.1.2	InterPro:FAD-binding_1
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039
InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667	PRINTS:PR00369
PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF10	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS6A01G158200	EnsemblPlants:TraesCS6A01G158200.1	TIGR:cd06207

Description

No Description!

Coordinates

chr6A:-:148529249..148533846

Molecular Weight (calculated)

64009.4 Da

IEP (calculated)

6.581

GRAVY (calculated)

-0.318

Length

568 amino acids

Sequence
(BLAST)

001: MDCFDPSCLP RERYVVFVVS TMGQGDPPDS MKDFWTYLTR KSLGARWLEG LFYAVFGLGD STYGKYNYPA KKLDRRLFNL GAKRITEKGL GDDQHSSGYE
101: GALDPWLLIL WKSLNQTNSS LLPRISDAIH PNLNILGDAK VEVIYYSAPQ DTTISDPKIL IERARSMSPA LKYHNEGEPQ FMLQMVTNQC LTKGDSDRDV
201: RHFELEDRYS PISYQVGDAL EILPSQNPSA VDAFIKRCNL DPDCYITIRA KGSDKLSKGS PMNSLMDPIK LKTFVALTMD VTSASPRRCF FEIMSYFATD
301: TDEKEKLQYL TSPEGRDDLY WYNQKENRTV LEVLQEFPSV HMPFEWLVQL TPPLKRRAFS ISSSPLVHPN QIHLTVSIVS WRTPLKRTRH GLCSTWLAGL
401: SPNEESIIPC WIHRGSLPHP KPSVPLVLIG PGTGCAPFRA FVEERAAQSV AEPTAPVLFF FGCRNQDNDF LYKDFWLNHA QDQGVLSLEK GGGLFVAFSR
501: DQPQKVYVQD KIREQGARVL NMLCSSEATI YVAGSSTRMP ADVTAALEEV LCQQGGVPKN DVSQWVTV

Best Arabidopsis Sequence Match ( AT3G02280.1 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.