Factsheet for TraesCS3A01G085300.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G100500.1	Wheat	plastid	84.97	86.83
TraesCS3A01G280500.2	Wheat	plastid	73.62	74.88
TraesCS6A01G158200.1	Wheat	cytosol, nucleus, peroxisome	61.2	70.25
Os01t0733600-01	Rice	cytosol	66.41	69.17
EES03571	Sorghum	cytosol, nucleus, peroxisome, plastid	64.57	66.3
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	59.2	61.37
GSMUA_Achr1P11640_001	Banana	cytosol	55.37	60.67
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	48.47	60.42
AT3G02280.2	Thale cress	mitochondrion	53.53	56.02
Bra001039.1-P	Field mustard	cytosol, mitochondrion	52.91	55.65
CDX91986	Canola	mitochondrion	53.22	55.52
Solyc02g085820.2.1	Tomato	cytosol	53.53	55.4
CDX74264	Canola	mitochondrion	52.76	55.39
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	53.37	55.24
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	53.37	55.06
KRH01775	Soybean	cytosol, mitochondrion	52.45	54.9
KRH46914	Soybean	cytosol, nucleus, peroxisome	24.85	46.15
CDY06413	Canola	mitochondrion, nucleus	48.01	31.58
TraesCS2A01G505800.2	Wheat	endoplasmic reticulum	24.54	22.86
TraesCS5A01G361100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	24.54	22.76

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:35.1	ncoils:Coil
InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010181	GO:GO:0016491	GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173
InterPro:IPR029039	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667
PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF10
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS3A01G085300	EnsemblPlants:TraesCS3A01G085300.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:55031272..55035428

Molecular Weight (calculated)

72836.9 Da

IEP (calculated)

8.510

GRAVY (calculated)

-0.434

Length

652 amino acids

Sequence
(BLAST)

001: MAPPPQHPPP ASGGRLLVLY ASQTGHAEEA AGRVGREAER GGCPAVHVLS MDSFDPSRLP GERSVIFVVS TAGQGEPPDS MKGFWRYLLK KNLDAPWLQG
101: LRYAVFGLGD SGYLQTYNVA AMKLRKRLSQ LGAKSIIGIG LGDEQASSGY EKALGPWVLS LWKSLNRTNP SLLPRIPDII NPNLNNLGDA KVEVIYYSSD
201: DTPQDSTVSD SKKLIGRARS MHPALKFHND GEPQYMLKMV TNERLTKKDS ERDVRHFELE DPSSAVRYQV GDALEILPSQ NPSAVNAFIK RCNLDPDCYI
301: TIRAKGGDEV SKGSPVNGLM DCIKLKTFVA LTMDVASASP GRYFYEIMSY FATVQHEKER LHCFATTEDE KERLQKKRLQ KERLEEFASP EGRDILYQYN
401: HKEGRTVLEV LEDFPWVHMP FEWLVQLTPP LKKRAFSVSS SPLAHPNQIH LTVSVVSWLA TPFRRKHGLC STWLAGLNPN EETRVPCWIH LGSLPPPDSS
501: TPLVLIGPGT GCAPFRAFVE ERAAQRARQP TAQILFFFGC RNEDDDFLHR DFWSHHAQDN RVLSLKEGGG FFAAFSRDQP EKVYVQHKIR EQSARVLNML
601: CSGAAVYVAG SSTKMPADVR AALEEVVRKK GGDAGWLRKL ERAGKYNTET WS

Best Arabidopsis Sequence Match ( AT3G02280.3 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.