CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74264	Canola	mitochondrion	48.44	77.29
CDX91986	Canola	mitochondrion	47.73	75.68
AT3G02280.2	Thale cress	mitochondrion	46.82	74.48
KRH01775	Soybean	cytosol, mitochondrion	37.54	59.71
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	37.94	59.68
Solyc02g085820.2.1	Tomato	cytosol	37.64	59.21
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	37.34	58.54
GSMUA_Achr1P11640_001	Banana	cytosol	34.21	56.97
Os01t0733600-01	Rice	cytosol	34.51	54.63
HORVU3Hr1G069620.2	Barley	plasma membrane	34.21	53.9
TraesCS3D01G280300.1	Wheat	plastid	34.31	53.63
TraesCS3A01G280500.2	Wheat	plastid	34.31	53.04
TraesCS3B01G314200.1	Wheat	cytosol	33.6	52.77
EES03571	Sorghum	cytosol, nucleus, peroxisome, plastid	33.7	52.6
TraesCS6A01G158200.1	Wheat	cytosol, nucleus, peroxisome	29.26	51.06
TraesCS1D01G227800.1	Wheat	cytosol, peroxisome, plastid	30.37	49.18
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	31.08	48.97
TraesCS3B01G100500.1	Wheat	plastid	31.38	48.75
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	25.53	48.37
TraesCS3A01G085300.1	Wheat	cytosol, nucleus, peroxisome	31.58	48.01
KRH46914	Soybean	cytosol, nucleus, peroxisome	16.45	46.44
CDY12377	Canola	plastid	9.69	34.29
CDY51656	Canola	plastid	17.36	24.36
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	17.05	24.32
CDX92639	Canola	vacuole	17.05	24.32
CDY28169	Canola	plastid	17.05	24.28
CDY03447	Canola	endoplasmic reticulum	16.95	24.17
CDY14183	Canola	cytosol, peroxisome, plastid	16.95	24.14
CDY34288	Canola	endoplasmic reticulum	16.85	24.03
CDX72222	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	17.15	24.01
CDY03543	Canola	plastid	17.05	23.8
CDX68634	Canola	plastid	17.05	23.74
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	16.45	23.49
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	13.32	22.26
CDY34997	Canola	mitochondrion	3.33	15.21

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:7.11.3.1.1.2	GO:A0A078F3W9
EnsemblPlants:CDY06413	ProteinID:CDY06413	ProteinID:CDY06413.1	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like
InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0016491	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00122401001	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	InterPro:NADPH_Cyt_P450_Rdtase_alpha
PFAM:PF00258	PFAM:PF00667	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF10	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
UniParc:UPI0004EE92C1	SEG:seg	:	:	:	:

Description

BnaC05g31170D

Coordinates

chrLK031969:-:513482..521927

Molecular Weight (calculated)

112370.0 Da

IEP (calculated)

8.604

GRAVY (calculated)

-0.440

Length

991 amino acids

Sequence
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGCPASIV STDEFDPSSL PHEEAIVFVV STTGQGDSPD SFKEFWKFLL QRNLGNSWLQ RVRFAVFGLG
101: DSGYQKYNFV AKKLDKRLLD LGATTIIEKG TKQLDPWMLS LWGTLYQINP KYFPKGPDVV IPRDELIDQP KYRIVYHKQE TLEPALMVES DIIERASEMS
201: PGKLSKDKSK PDCFLKMTKN EVLTKAGSTK DVRHFEFQFV SSSIKYEVGD VVELLPSQDS SAVDAFIERC DLDPESFITV HPRETESNGS FGEVITHVPI
301: KLKTFVELTM DVTSASPRRY FSEVMSFYAT AEHEKARLQY FASPEGRDDL YNYNQKERRS VLEVLEDFPS VQMPFEWLVQ LVPALKPRAF SISSSPLAYP
401: AQVHLTVSVV SWMTPYKRPR KGLCSTWLAS LTPEQGVNIP VWFHKSSLPA PPQSVPLILV GPGTGCAPFR GFIAERAVQA ERAVQAETSP TAPVMLFFGS
501: RNGHRFFIPR LLGVPCKRRR LSSKYVGYII LSTAPKVFQK RRTSPELKIE EYPILWNSRK LQPYQEKLHQ SPVYLKISWN NLLSTGSYLF MRKNSNMVLF
601: PEYKKAKEQH KKRNMPRRSD LNQARNVIKE FEHPSIQGRT MYSSVIGSSN EEGTWRSTDS AANTDGPAIM SDLHSLIQAF ISSKKAGTHS LDPKPIIIDS
701: GASHHMISDR NLISDVQPAS GNFTSNLLSV RKATVDLSCQ VIFRPDEVEF QDLKTDQVIG KGHVHNELYH LQKTEMSRPS TSQCLAKPEQ IQTQVEAPSE
801: GNEAEPEQIQ PLRRSTRIRK PSQWINTKVY FNAEAVAHPI SAVCSLAQYP EDHQVFISEF DQEYIPRTYE EAMFKNDTCR SKLPDLRSKL LDLRIKLPDL
901: RSMLSEVRGG GFYTAFSRDQ PKKVYVQHKI REMGKEVWDL LCDGAAVYVA GSSTKMPCDV MSALEEIVME ETGGSKEMAS RWLKAWEKIQ C

Best Arabidopsis Sequence Match ( AT3G02280.3 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.