Factsheet for TraesCS1D01G227800.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	83.66	81.4
TraesCS3D01G280300.1	Wheat	plastid	67.48	65.14
EES03571	Sorghum	cytosol, nucleus, peroxisome, plastid	64.05	61.73
Os01t0733600-01	Rice	cytosol	63.07	61.66
GSMUA_Achr1P11640_001	Banana	cytosol	56.05	57.65
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	48.37	56.6
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	54.9	53.33
Solyc02g085820.2.1	Tomato	cytosol	54.9	53.33
Bra001039.1-P	Field mustard	cytosol, mitochondrion	53.59	52.9
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	54.41	52.69
CDX74264	Canola	mitochondrion	53.43	52.66
KRH01775	Soybean	cytosol, mitochondrion	53.43	52.49
AT3G02280.2	Thale cress	mitochondrion	52.94	52.01
CDX91986	Canola	mitochondrion	53.1	52.0
KRH46914	Soybean	cytosol, nucleus, peroxisome	25.65	44.73
CDY06413	Canola	mitochondrion, nucleus	49.18	30.37
TraesCS5D01G370100.1	Wheat	peroxisome	27.78	24.18
TraesCS2D01G506600.1	Wheat	endoplasmic reticulum	26.47	23.41

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:7.11.3.1.1.2	InterPro:FAD-binding_1
InterPro:Fd_Rdtase_FAD-bd	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016491	GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039
InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667	PRINTS:PR00369
PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF10	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:TraesCS1D01G227800	EnsemblPlants:TraesCS1D01G227800.1	TIGR:cd06207
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:316006540..316010965

Molecular Weight (calculated)

68640.1 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.314

Length

612 amino acids

Sequence
(BLAST)

001: MAPSSSPLPG RLVILYSSQT GNAIDAAERV GREAEHGGCP AVEVLSTDSF NPSCLPDERF MIFIVSTMGQ GDPPDSMKDF WKYLLRNHLG VRWLKGLHYA
101: VFGLGYSSYR ECNFPAIKLD QRIFDLGAKR ITERGLGDDQ HSLGYEGELD PWLLSLWKSL NRTNPSLLPR VSDASHRKLN ILGDAKVEVI YYSAPQATDI
201: SDSKILIEKA RSMSPALKCH NSIEPLHMLQ MVTNQRLTKG DTDRDVRHFE LEDWRSAISY QVGDVLEILP SQNPSLVDDF IKRCNLDPDC YITVRTKGGD
301: KVPKDPIKLK TFVALTMDVM SYFATDEREK AKLRDYTSPE GRGDLYRYNQ KENRTVLEVL ADFPSVQMPF EWLVQLTPPL KKRAFSISSS PLVHPNQIHL
401: TVSVVSWLTP WKRTRHGLCS TWLAGLSPNE DDHLIPCWIR RGSLPRPRPS VPLLLIGPGT GCAPFRAVVE ERAAQSVADP TVAPVLFFFG CRNQESDFLY
501: KDFWLKHAQG QGGVLSHEKV GGFFTAFSRD QPRKVYVQDK IKEQGARVLD MLCSESFKAA IYVAGSSTGM PADVTAALEE VLCQEGGVPR EDASGWLKDL
601: KRAGRFIVET WS

Best Arabidopsis Sequence Match ( AT3G02280.1 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.