CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 3
peroxisome 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043539_P001	Maize	cytosol, nucleus, peroxisome, plastid	62.83	76.29
TraesCS3D01G280300.1	Wheat	plastid	74.65	74.76
HORVU3Hr1G069620.2	Barley	plasma membrane	72.76	73.45
Os01t0733600-01	Rice	cytosol	72.28	73.32
TraesCS3A01G280500.2	Wheat	plastid	73.54	72.85
TraesCS3B01G314200.1	Wheat	cytosol	71.65	72.11
TraesCS6A01G158200.1	Wheat	cytosol, nucleus, peroxisome	62.2	69.54
TraesCS3B01G100500.1	Wheat	plastid	67.72	67.4
TraesCS3A01G085300.1	Wheat	cytosol, nucleus, peroxisome	66.3	64.57
TraesCS1A01G226400.1	Wheat	cytosol, peroxisome, plastid	63.62	64.23
TraesCS1D01G227800.1	Wheat	cytosol, peroxisome, plastid	61.73	64.05
GSMUA_Achr1P11640_001	Banana	cytosol	59.37	63.36
KRH01775	Soybean	cytosol, mitochondrion	58.27	59.39
CDX91986	Canola	mitochondrion	58.43	59.36
AT3G02280.2	Thale cress	mitochondrion	58.11	59.23
Bra001039.1-P	Field mustard	cytosol, mitochondrion	57.8	59.19
CDX74264	Canola	mitochondrion	57.64	58.94
Solyc02g085820.2.1	Tomato	cytosol	57.95	58.41
PGSC0003DMT400033003	Potato	cytosol, nucleus, peroxisome	57.95	58.41
VIT_14s0006g03070.t01	Wine grape	cytosol, mitochondrion, nucleus, peroxisome	57.64	57.91
KRH46914	Soybean	cytosol, nucleus, peroxisome	26.3	47.58
CDY06413	Canola	mitochondrion, nucleus	52.6	33.7
EES13592	Sorghum	cytosol, peroxisome, plastid	27.4	24.65
EES11568	Sorghum	plastid	26.77	24.5
EER99347	Sorghum	endoplasmic reticulum, peroxisome, plastid	25.98	23.37

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:7.11.3.1.1.2	EntrezGene:8062137
UniProt:C5XJ39	EnsemblPlants:EES03571	ProteinID:EES03571	ProteinID:EES03571.1	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000003	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003958	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010181
GO:GO:0016043	GO:GO:0016226	GO:GO:0016491	GO:GO:0016651	GO:GO:0050660	GO:GO:0050661
GO:GO:0055114	InterPro:IPR008254	InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	HAMAP:MF_03178
InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:NDOR1	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175	PFAM:PF00258	PFAM:PF00667
PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384	PANTHER:PTHR19384	PANTHER:PTHR19384:SF10
InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3003G287100	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380	UniParc:UPI0001A84E63
RefSeq:XP_002458451.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:62012537..62019086

Molecular Weight (calculated)

70758.0 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.304

Length

635 amino acids

Sequence
(BLAST)

001: MAPSSAEADS PASASGRLLV LYASQTGNAM DAAERVGREA ERGGCPAVDV LSMDSFDPSR LPSERFVVFV VSTTGQGDPP DSMKGFWRYL LRKDLDRQWL
101: KGIHHAVFGL GDSGYQKYNF AAKKLDRRLL HLGAEPVLEI GLGDDQHPSG YEGALDPWLL SLWKSLNEIN PSLLPRVSDI NDSNLSILGD PKVHVIYYSS
201: NEVPQDSVLS DPSKIISSAR SMSPALRFHA DAEPAYMLQM VKNKCLTKEG SDRDVRHFEL EDPSSAISYK IGDTLEILPS QNPSAVDAFI ERCNLDPDCY
301: ITVQVRSGDK VSNDSVVNSQ MDRIKLRTFV ALTMDVASAS PRRYFFEVMS FFATSEREKE RLQYFASPEG RDDLYQYNQK ESRTVLEVLE DFPSVQMPFE
401: WLVQLTPPLK KRAFSISSSP LAHPNQIHLT VSIVAWVTPF KRTRRGLCST WLAGLNPNKD NLIPCWIHQG SLPPPRPLVP LVLIGPGTGC APFRAFVEER
501: AAQAAAEPTA AVMFFFGCRN QDNDFLYKDF WLTHAQDEGV LSSKKGGGLF VAFSRDQPQK VYVQHKIKEH SSRVWNLLLS DAVIYIAGSS TKMPADVTAA
601: LEEVICKEGG VKQEDASKWL RDLERAGRLN IETWS

Best Arabidopsis Sequence Match ( AT3G02280.3 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.