CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g03120.t01	Wine grape	cytosol	22.5	45.32
TraesCS6B01G187700.4	Wheat	cytosol	22.5	23.16
CDX74264	Canola	mitochondrion	36.07	16.26
CDX91986	Canola	mitochondrion	36.07	16.16
CDY34997	Canola	mitochondrion	8.21	10.6
CDY06413	Canola	mitochondrion, nucleus	34.29	9.69
CDY70343	Canola	cytosol, endoplasmic reticulum, peroxisome	18.93	8.94
CDY34288	Canola	endoplasmic reticulum	21.07	8.49
CDX92639	Canola	vacuole	20.71	8.35
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	20.71	8.35
CDY14183	Canola	cytosol, peroxisome, plastid	20.71	8.33
CDY03447	Canola	endoplasmic reticulum	20.36	8.2
CDY03543	Canola	plastid	20.71	8.17
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	20.0	8.07
CDX68634	Canola	plastid	19.64	7.72
CDY28169	Canola	plastid	18.93	7.61
CDY51656	Canola	plastid	18.93	7.51
CDX72222	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	18.57	7.34

Protein Annotations

Gene3D:3.40.50.360	MapMan:35.1	GO:A0A078FHC0	UniProt:A0A078FHC0	EnsemblPlants:CDY12377	ProteinID:CDY12377
ProteinID:CDY12377.1	ncoils:Coil	InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprotein-like_sf	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00061577001	InterPro:IPR008254	InterPro:IPR029039	PFAM:PF00258	PRINTS:PR00369	PFscan:PS50902
PANTHER:PTHR19384	PANTHER:PTHR19384:SF10	SUPFAM:SSF52218	UniParc:UPI0004EDC020	:	:

Description

BnaC08g08280DBnaC08g08280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FHC0]

Coordinates

chrLK032021:-:372596..375009

Molecular Weight (calculated)

31484.0 Da

IEP (calculated)

9.734

GRAVY (calculated)

-0.079

Length

280 amino acids

Sequence
(BLAST)

001: MTLKRASFTS SLFIVSSFQL HIYHPPPFSV HLKGQFPLPL SLFGPFNRVP ETLLMLHSVL AVKLNAEAVL RLSSPTTNST RYSSLPHEDA ILFVVSTTGK
101: GDSPDSFKEF WRFLLQRNLG NSWLQRVRFA VFGLGDSGYQ KYNFVTKKLD KRLLDLGATT IIEKGLGDDQ HPSWYGTLKR LRNRASLKIS GQQAQLIWTT
201: SPFLLKEEAY HPARLLNLNL FPETQIPCLS LPSSLESDNW NAASYDSLKN AEVMSPLIIV SHCPHDGGLL FFMGRSCINV

Best Arabidopsis Sequence Match ( AT3G02280.1 )
(BLAST)

001: MGEKQRKLLV LYASQTGNAL DAAERIGREA ERRGLPASVV STDEFDTSSL PHHEEAVVFV VSTTGQGDSP DSFKAFWRFL LQRNLGNYWL QQVRYAVFGL
101: GDSGYQKYNF VAKKLDKRLS DLGATTIIEK GLGDDQHPSG YEGTLDPWML SLWRTLYQIN PKYFPKGPDV KIPQDEVIDK PKYRILFHKQ EKLEPKLLSD
201: SDIIQRARGM SPGKLFKDKS KPDCFLKMTR NEVLTKAEST KDVRHFEFQF VSSTIEYEVG DVVELLPSQN SSVVDAFIER CGLDPESFIT VGPRETENSS
301: FSEEMITQIP IKLKTFVELT MDVTSASPRR YFFEIMSFYA TAEHEKERLQ YFASPEGRDD LYNYNQKERR SILEVLEDFP SVQIPFDWLV QLVPPLKPRA
401: FSISSSPLAH PAAVHLTVSI VSWITPYKRT RKGLCSSWLA SLAPEQEVNI PVWFHKGSLP APSQSLPLIL VGPGTGCAPF RGFIAERAVQ AQSSPVAPVM
501: FFFGCRNKDT DFLYRDFWES HAREGGMLSE GKGGGFYTAF SRDQPKKVYV QHKIREMSKR VWDLLCDGAA VYVAGSSTKM PCDVMSAFED IVSEETGGGS
601: KEVASRWLKA LEKTGRYNVE AWS

Arabidopsis Description

ATR3NADPH-dependent diflavin oxidoreductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPS8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.