CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34287	Canola	cytosol, endoplasmic reticulum, peroxisome	94.94	81.12
CDY03447	Canola	endoplasmic reticulum	87.35	74.53
CDY34288	Canola	endoplasmic reticulum	87.18	74.39
CDX92639	Canola	vacuole	87.02	74.24
CDY11017	Canola	endoplasmic reticulum, plastid, vacuole	86.51	73.81
AT4G24520.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	82.46	70.66
KRH62244	Soybean	endoplasmic reticulum	73.02	62.66
KRH52957	Soybean	endoplasmic reticulum	72.01	61.79
Solyc04g076380.2.1	Tomato	plastid	71.33	61.66
PGSC0003DMT400024163	Potato	endoplasmic reticulum	71.16	61.52
KRH16854	Soybean	endoplasmic reticulum	70.99	61.1
KRH72466	Soybean	cytosol, peroxisome, plastid	63.41	60.55
VIT_18s0001g07630.t01	Wine grape	endoplasmic reticulum	69.48	59.88
CDY28169	Canola	plastid	61.89	52.73
CDY14183	Canola	cytosol, peroxisome, plastid	61.89	52.73
CDY03543	Canola	plastid	62.39	52.11
CDX72222	Canola	cytosol, endoplasmic reticulum, peroxisome, plastid	62.06	51.98
CDY51656	Canola	plastid	61.72	51.84
CDX68634	Canola	plastid	61.89	51.54
CDY34997	Canola	mitochondrion	9.11	24.88
CDX91986	Canola	mitochondrion	22.09	20.96
CDX74264	Canola	mitochondrion	21.92	20.93
CDY12377	Canola	plastid	8.94	18.93
CDY06413	Canola	mitochondrion, nucleus	22.26	13.32

Protein Annotations

Gene3D:1.20.990.10	Gene3D:2.40.30.10	Gene3D:3.40.50.360	Gene3D:3.40.50.80	MapMan:50.1.6	GO:A0A078JS04
UniProt:A0A078JS04	EnsemblPlants:CDY70343	ProteinID:CDY70343	ProteinID:CDY70343.1	InterPro:FAD-binding_1	InterPro:Fd_Rdtase_FAD-bd
InterPro:Flavdoxin-like	InterPro:Flavodoxin/NO_synth	InterPro:Flavoprot_Pyr_Nucl_cyt_Rdtase	InterPro:Flavoprotein-like_sf	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0010181
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00098200001	InterPro:IPR008254
InterPro:IPR017927	InterPro:IPR023173	InterPro:IPR029039	InterPro:NADPH_Cyt_P450_Rdtase_alpha	InterPro:OxRdtase_FAD/NAD-bd	PFAM:PF00175
PFAM:PF00258	PFAM:PF00667	PRINTS:PR00369	PRINTS:PR00371	PFscan:PS50902	PFscan:PS51384
PANTHER:PTHR19384	PANTHER:PTHR19384:SF85	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52218	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI0004EDB408	SEG:seg	:	:	:

Description

BnaCnng67910DBnaCnng67910D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JS04]

Coordinates

chrLK041834:-:71..3277

Molecular Weight (calculated)

64914.3 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.235

Length

593 amino acids

Sequence
(BLAST)

001: MTSTFDASSA LAKQLKSVLG MSLDTPVSDD VVLVIATTSL ALAVGFAALL WKKTTSDQRR EVKPLMVPKS LIMAKDDDVD LGSGKSRVSI FFGTQTGNAE
101: GFAKALAEEI KVRYEKAAVK VIDLDDYAAD DDQYKEKLKK ETLAFFCVAT YGDGEPTDNA ARFYKWFTEG NEGDTRLQLL TYGVFALGNR QYEHFNKIGI
201: VLDEELSKKG AKRLIEVGLG DDDQSIEDDF NAWKESLWPE LDKLLRGEED TSVVTPYKAA IPEYRLVIHD PSFISEKSMD SNLANGNAAI DIHHPCRADV
301: AVQRELHTPE SDRSCIHLEF DISGTGITYE TGDHVGVYAE NHAEIVEEAA KLLGHSLDLV FSIHADKEDG SPLGSSLPPP FPGPCTLGTA LAKYADLLTP
401: PRKSALVALA TYATEPNEAK KLKHLTSPDG KKEYSQWIAA SQRSLLEVMS AFPSAKPPLG VFFAAIAPRL QPRYYSISSS PRLAPNRVHV TCALVYGPTP
501: TGRIHKGLCS TWMKNAVPAE KSRECSGAPI FIRASNFKLP SNPSTPIVMV GPGTGLAPFR GFLQERMALK EDGVELGPSL LFFGCRNRRM VRF

Best Arabidopsis Sequence Match ( AT4G24520.1 )
(BLAST)

001: MTSALYASDL FKQLKSIMGT DSLSDDVVLV IATTSLALVA GFVVLLWKKT TADRSGELKP LMIPKSLMAK DEDDDLDLGS GKTRVSIFFG TQTGTAEGFA
101: KALSEEIKAR YEKAAVKVID LDDYAADDDQ YEEKLKKETL AFFCVATYGD GEPTDNAARF YKWFTEENER DIKLQQLAYG VFALGNRQYE HFNKIGIVLD
201: EELCKKGAKR LIEVGLGDDD QSIEDDFNAW KESLWSELDK LLKDEDDKSV ATPYTAVIPE YRVVTHDPRF TTQKSMESNV ANGNTTIDIH HPCRVDVAVQ
301: KELHTHESDR SCIHLEFDIS RTGITYETGD HVGVYAENHV EIVEEAGKLL GHSLDLVFSI HADKEDGSPL ESAVPPPFPG PCTLGTGLAR YADLLNPPRK
401: SALVALAAYA TEPSEAEKLK HLTSPDGKDE YSQWIVASQR SLLEVMAAFP SAKPPLGVFF AAIAPRLQPR YYSISSSPRL APSRVHVTSA LVYGPTPTGR
501: IHKGVCSTWM KNAVPAEKSH ECSGAPIFIR ASNFKLPSNP STPIVMVGPG TGLAPFRGFL QERMALKEDG EELGSSLLFF GCRNRQMDFI YEDELNNFVD
601: QGVISELIMA FSREGAQKEY VQHKMMEKAA QVWDLIKEEG YLYVCGDAKG MARDVHRTLH TIVQEQEGVS SSEAEAIVKK LQTEGRYLRD VW

Arabidopsis Description

ATR1NADPH--cytochrome P450 reductase [Source:UniProtKB/TrEMBL;Acc:A0A178UWR2]
SUBAcon: [endoplasmic reticulum,cytosol,peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.