CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51480	Soybean	nucleus	98.15	98.15
VIT_03s0038g00160.t01	Wine grape	nucleus	87.04	87.44
Solyc01g110020.2.1	Tomato	nucleus	81.02	81.02
PGSC0003DMT400079501	Potato	nucleus	77.78	79.62
KRG99457	Soybean	cytosol	33.33	75.0
GSMUA_Achr9P25510_001	Banana	nucleus	67.59	67.91
KRH26200	Soybean	nucleus	67.13	67.13
KRH55144	Soybean	nucleus	66.2	66.2
KRH27310	Soybean	nucleus	66.2	66.2
Zm00001d019039_P002	Maize	extracellular	66.2	65.3
Os07t0186400-01	Rice	nucleus	65.28	64.68
AT4G39100.1	Thale cress	nucleus	68.06	64.47
HORVU2Hr1G054100.1	Barley	nucleus	64.35	63.76
CDY12119	Canola	nucleus	67.13	63.32
TraesCS2B01G257000.1	Wheat	nucleus	63.89	63.3
TraesCS2D01G242500.1	Wheat	nucleus	63.89	63.3
KRH22009	Soybean	nucleus	66.2	63.0
Os03t0799600-01	Rice	nucleus	62.04	61.47
TraesCS5D01G453200.1	Wheat	nucleus	64.35	61.23
TraesCS5A01G445200.2	Wheat	nucleus	64.35	61.23
TraesCS2A01G227100.2	Wheat	nucleus	62.96	60.71
TraesCS5B01G450300.1	Wheat	nucleus	64.35	60.7
OQU88587	Sorghum	nucleus	64.81	53.03
HORVU5Hr1G106800.2	Barley	nucleus, plastid	64.35	51.48
CDX90311	Canola	nucleus	67.59	43.45
Bra010705.1-P	Field mustard	nucleus	67.59	43.45

Protein Annotations

EntrezGene:100526926	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EMBL:ACUP02002140	InterPro:BAH_dom
EMBL:BT091729	UniProt:C6T2S0	EnsemblPlantsGene:GLYMA_04G009500	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507
GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR019787	EnsemblPlants:KRH60792	ProteinID:KRH60792
ProteinID:KRH60792.1	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI0001B151C2
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:

Description

hypothetical protein

Coordinates

chr4:-:757270..761040

Molecular Weight (calculated)

24864.2 Da

IEP (calculated)

8.264

GRAVY (calculated)

-0.754

Length

216 amino acids

Sequence
(BLAST)

001: MAKPKAPRRT LESYSVKHIS KTIRAGDCVL MRPSDLSKPS YVARIERIEA DARGSNVKIH VRWYYRPEES IGGRRQFHGS KEVFLSDHFD VQSADTIEAK
101: CTVHSFKSYT KLDAVGNDDF FCRFEYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC TDWFHPACID MTVEEAKRLD HFFCENCSAE GQKKLQNSHS
201: ASRHSDTKVD TKRRRR

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.