CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G39100.1	Thale cress	nucleus	82.53	82.89
KRH60792	Soybean	nucleus	63.32	67.13
KRH51480	Soybean	nucleus	63.32	67.13
CDX90311	Canola	nucleus	98.25	66.96
KRG99457	Soybean	cytosol	27.51	65.62
VIT_03s0038g00160.t01	Wine grape	nucleus	61.57	65.58
PGSC0003DMT400079501	Potato	nucleus	60.26	65.4
Solyc01g110020.2.1	Tomato	nucleus	61.57	65.28
Os07t0186400-01	Rice	nucleus	61.57	64.68
Zm00001d019039_P002	Maize	extracellular	60.7	63.47
TraesCS2B01G257000.1	Wheat	nucleus	59.39	62.39
HORVU2Hr1G054100.1	Barley	nucleus	58.95	61.93
TraesCS2D01G242500.1	Wheat	nucleus	58.95	61.93
GSMUA_Achr9P25510_001	Banana	nucleus	57.21	60.93
TraesCS2A01G227100.2	Wheat	nucleus	58.52	59.82
CDX98731	Canola	cytosol	57.21	58.48
CDX94078	Canola	cytosol	57.21	58.48
Os03t0799600-01	Rice	nucleus	55.02	57.8
CDX79127	Canola	cytosol	56.33	57.59
CDX82909	Canola	cytosol	56.33	57.59
CDY27445	Canola	cytosol	55.9	57.14
CDX76384	Canola	cytosol	55.46	56.7
TraesCS5A01G445200.2	Wheat	nucleus	55.46	55.95
TraesCS5D01G453200.1	Wheat	nucleus	55.46	55.95
TraesCS5B01G450300.1	Wheat	nucleus	55.46	55.46
OQU88587	Sorghum	nucleus	58.52	50.76
HORVU5Hr1G106800.2	Barley	nucleus, plastid	54.59	46.3
CDX94076	Canola	cytosol	12.66	21.97

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	GO:A0A078FGH9	UniProt:A0A078FGH9	InterPro:BAH_dom
EnsemblPlants:CDY12119	ProteinID:CDY12119	ProteinID:CDY12119.1	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00061109001	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628
PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39
SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI0004EE658E	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

BnaC03g60350DBnaC03g60350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGH9]

Coordinates

chrLK032017:-:701788..703393

Molecular Weight (calculated)

26075.6 Da

IEP (calculated)

8.317

GRAVY (calculated)

-0.805

Length

229 amino acids

Sequence
(BLAST)

001: MPKQKAQKKQ LKSYKLKHIN RTIQEGDAVL MRSSEPGKPS YVARVEAIEA TDARGSNARV RVRWYYRPEE SMGGRRQFHG AKEVFLSDHF DLQSADTIEG
101: KCKVHSFSSY TKLSSVGNDD FFCRFEYNSA TGAFIPDRVA VFCKCEMPYN PDDLMVQCEE CSEWFHPSCI GTTIEAAKKL DHFYCEECSP ELENLDNSNS
201: TSKNTDAKVN TKRSLEVSKT RNKHAKRSG

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.