Factsheet for Os07t0186400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019039_P002	Maize	extracellular	94.04	93.61
HORVU2Hr1G054100.1	Barley	nucleus	91.74	91.74
TraesCS2D01G242500.1	Wheat	nucleus	91.28	91.28
TraesCS2B01G257000.1	Wheat	nucleus	91.28	91.28
TraesCS2A01G227100.2	Wheat	nucleus	88.99	86.61
Os03t0799600-01	Rice	nucleus	75.69	75.69
GSMUA_Achr9P25510_001	Banana	nucleus	72.48	73.49
OQU88587	Sorghum	nucleus	86.24	71.21
VIT_03s0038g00160.t01	Wine grape	nucleus	66.97	67.91
PGSC0003DMT400079501	Potato	nucleus	64.22	66.35
Os09t0386500-01	Rice	nucleus	65.6	66.2
Solyc01g110020.2.1	Tomato	nucleus	65.6	66.2
KRH51480	Soybean	nucleus	64.68	65.28
KRH60792	Soybean	nucleus	64.68	65.28
Os08t0421900-01	Rice	nucleus	62.39	62.96
CDY12119	Canola	nucleus	64.68	61.57
KRG99457	Soybean	cytosol	26.15	59.38
AT4G39100.1	Thale cress	nucleus	59.63	57.02
CDX90311	Canola	nucleus	64.68	41.96
Bra010705.1-P	Field mustard	nucleus	64.68	41.96

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EntrezGene:4342595	ProteinID:BAC79935.1	ProteinID:BAD30193.1
InterPro:BAH_dom	ProteinID:BAT00377.1	ProteinID:EEE66704.1	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507
GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlantsGene:Os07g0186400
EnsemblPlants:Os07t0186400-01	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	UniProt:Q7XI22	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903
UniParc:UPI00001B3AA7	RefSeq:XP_015647894.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

Similar to SHL1. (Os07t0186400-01)

Coordinates

chr7:+:4606698..4614551

Molecular Weight (calculated)

24923.5 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.704

Length

218 amino acids

Sequence
(BLAST)

001: MAKSRPPKRI LESYTIKGSD KVIKPGDCVL MRASDTSKPP YVARVEAIEA AGSRGTNVRV RVRWYYRPEE SMGGRRPFHG AKEVFLSDHY DVQSADTIEG
101: KCNVHSFRSY TKLDSVNAED FFCRFEYKSA TGSFVPDRIA VFCKCEMPYN PDDLMIQCEE CSDWFHPSCI GMTIKDAKKL EHFFCQSCTA ENGKMAENSH
201: EATAQSEEKQ VESKRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.