Factsheet for Os08t0421900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	88.43	88.43
Os09t0386500-01	Rice	nucleus	82.87	82.87
VIT_12s0059g01180.t01	Wine grape	nucleus	76.85	77.21
Solyc05g042030.2.1	Tomato	nucleus	73.61	75.0
Solyc07g049210.2.1	Tomato	nucleus	74.54	74.54
GSMUA_Achr4P11410_001	Banana	nucleus	73.61	73.61
KRH26200	Soybean	nucleus	73.15	73.15
KRH27310	Soybean	nucleus	73.15	73.15
KRH55144	Soybean	nucleus	72.69	72.69
KXG25172	Sorghum	mitochondrion, plastid	91.2	71.64
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	66.67	70.24
PGSC0003DMT400043916	Potato	nucleus	72.69	68.86
KRH22009	Soybean	nucleus	71.76	68.28
PGSC0003DMT400001796	Potato	nucleus	73.61	67.95
CDX94078	Canola	cytosol	70.37	67.86
CDX98731	Canola	cytosol	70.37	67.86
Bra019395.1-P	Field mustard	nucleus	69.91	67.41
CDX82909	Canola	cytosol	68.98	66.52
CDX79127	Canola	cytosol	68.52	66.07
CDX76384	Canola	cytosol	68.06	65.62
CDY27445	Canola	cytosol	67.59	65.18
AT4G22140.3	Thale cress	cytosol	68.52	63.25
Bra013592.1-P	Field mustard	nucleus	67.13	62.77
Os07t0186400-01	Rice	nucleus	62.96	62.39
Os03t0799600-01	Rice	nucleus	59.72	59.17
AT4G04260.2	Thale cress	cytosol	54.63	57.28
Bra020856.1-P	Field mustard	nucleus	66.2	50.18
CDX94076	Canola	cytosol	12.5	20.45

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EntrezGene:4345596	ProteinID:BAC98658.1	ProteinID:BAF23738.1
InterPro:BAH_dom	ProteinID:BAT05475.1	ProteinID:EEE68702.1	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507
GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR019787	EnsemblPlantsGene:Os08g0421900	EnsemblPlants:Os08t0421900-01
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	UniProt:Q7EYS4	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00001D6BF3
RefSeq:XP_015648341.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08t0421900-01)

Coordinates

chr8:+:20204744..20207777

Molecular Weight (calculated)

24844.4 Da

IEP (calculated)

8.537

GRAVY (calculated)

-0.802

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKQGKRD VDSYTISGTN KVVRVGDCVL MRPVDSDNQP YVARVEKMEL DGRGSVRVRV RWYYRPEESK GGRRQFHGAK ELFLSDHFDM QSANTIEGKC
101: VVHSFKNYTK LDNVGPEDFF CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCDDCK DWFHPSCMSM TIEQAKKLDH FVCSDCVKEN GAKRPSHAYA
201: GSTKYEPKAE SKRQRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.