Factsheet for PGSC0003DMT400043916

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042030.2.1	Tomato	nucleus	90.35	97.17
VIT_12s0059g01180.t01	Wine grape	nucleus	83.33	88.37
GSMUA_Achr7P02260_001	Banana	nucleus	78.07	82.41
GSMUA_Achr3P08070_001	Banana	nucleus	77.19	81.48
PGSC0003DMT400001796	Potato	nucleus	82.02	79.91
TraesCS5D01G208000.1	Wheat	nucleus	72.37	76.39
TraesCS5B01G200300.1	Wheat	nucleus	71.93	75.93
EER96695	Sorghum	nucleus	71.49	75.46
Os09t0386500-01	Rice	nucleus	70.18	74.07
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	69.74	73.95
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	70.61	73.85
Os08t0421900-01	Rice	nucleus	68.86	72.69
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	66.67	70.37
PGSC0003DMT400043085	Potato	nucleus	64.47	69.67
PGSC0003DMT400079501	Potato	nucleus	61.84	66.82
GSMUA_Achr8P22620_001	Banana	cytosol	79.39	65.58
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	57.46	63.9
TraesCS5A01G201700.1	Wheat	nucleus, plastid	71.93	57.54
KXG25172	Sorghum	mitochondrion, plastid	68.86	57.09
HORVU5Hr1G059970.1	Barley	mitochondrion	71.93	51.25
Zm00001d005705_P001	Maize	plastid	48.68	44.94

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	ProteinID:ABB29929	ProteinID:ABB29929.1	InterPro:BAH_dom
EMBL:DQ235172	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M1BFC4	PFAM:PF00628	PFAM:PF01426	EnsemblPlantsGene:PGSC0003DMG401017043
PGSC:PGSC0003DMG401017043	EnsemblPlants:PGSC0003DMT400043916	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI0002963436	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:

Description

Phd finger transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG401017043]

Coordinates

chr5:-:32754127..32757896

Molecular Weight (calculated)

26082.1 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.604

Length

228 amino acids

Sequence
(BLAST)

001: MAKTKPGKKD LDSYSIKGTN KVVRVGDCVL MRPSDSDKPP YVAKVDRIEA DHRNNVKVRV QWYYRPEESV GGRRQFHGAK ELFLSDHYDF QSAHTIEGKC
101: IVHSFKNYTK LENVGPEDYF CRFDYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPICMGM TIEEAKKLDP FLCSDCSSED DAKRPLNSFH
201: VEPKLVVRSF YLRRKRVMGS VGSGGLHV

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.