Factsheet for GSMUA_Achr3P08070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02260_001	Banana	nucleus	94.44	94.44
VIT_12s0059g01180.t01	Wine grape	nucleus	89.35	89.77
Solyc05g042030.2.1	Tomato	nucleus	82.41	83.96
KRH27310	Soybean	nucleus	83.33	83.33
Solyc07g049210.2.1	Tomato	nucleus	82.41	82.41
KRH26200	Soybean	nucleus	82.41	82.41
GSMUA_Achr4P11410_001	Banana	nucleus	82.41	82.41
KRH55144	Soybean	nucleus	82.41	82.41
KRH22009	Soybean	nucleus	82.41	78.41
CDX94078	Canola	cytosol	81.02	78.12
Bra019395.1-P	Field mustard	nucleus	80.56	77.68
CDX82909	Canola	cytosol	80.09	77.23
CDX98731	Canola	cytosol	80.09	77.23
PGSC0003DMT400043916	Potato	nucleus	81.48	77.19
CDX79127	Canola	cytosol	79.63	76.79
CDX76384	Canola	cytosol	78.7	75.89
CDY27445	Canola	cytosol	78.24	75.45
PGSC0003DMT400001796	Potato	nucleus	81.02	74.79
GSMUA_Achr8P22620_001	Banana	cytosol	94.44	73.91
Bra013592.1-P	Field mustard	nucleus	77.31	72.29
AT4G22140.3	Thale cress	cytosol	77.78	71.79
GSMUA_Achr10P...	Banana	cytosol	75.46	70.56
GSMUA_Achr9P25510_001	Banana	nucleus	65.28	65.58
AT4G04260.2	Thale cress	cytosol	59.72	62.62
Bra020856.1-P	Field mustard	nucleus	75.93	57.54
GSMUA_Achr2P18690_001	Banana	cytosol	42.13	46.19
CDX94076	Canola	cytosol	16.67	27.27

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G08070_001	EnsemblPlants:GSMUA_Achr3P08070_001	EnsemblPlants:GSMUA_Achr3T08070_001	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M0SCS4	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI000296E566	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Putative Protein polybromo-1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08070_001]

Coordinates

chr3:-:5679974..5687164

Molecular Weight (calculated)

24762.4 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.731

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKPGRKD LDSYTIKGTN KVVRVGDCVL MRPAESEKPP YVARVEKIEA DHRNNVRVRV RWYYRPEESI GGRRLFHGAK ELFLSDHYDV QSAHTIEGKC
101: VVHSFKNYTK LENVGAEDYF CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIEQAKKLDH FLCSDCDSEN DASRSINGFP
201: ASSVSEPKAE PKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.