Factsheet for GSMUA_Achr8P22620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P02260_001	Banana	nucleus	74.28	94.91
GSMUA_Achr3P08070_001	Banana	nucleus	73.91	94.44
VIT_12s0059g01180.t01	Wine grape	nucleus	71.38	91.63
Solyc05g042030.2.1	Tomato	nucleus	66.3	86.32
Solyc07g049210.2.1	Tomato	nucleus	66.67	85.19
GSMUA_Achr4P11410_001	Banana	nucleus	64.86	82.87
KRH27310	Soybean	nucleus	64.49	82.41
KRH55144	Soybean	nucleus	63.04	80.56
KRH26200	Soybean	nucleus	63.04	80.56
PGSC0003DMT400043916	Potato	nucleus	65.58	79.39
KRH22009	Soybean	nucleus	64.13	77.97
CDX94078	Canola	cytosol	63.04	77.68
PGSC0003DMT400001796	Potato	nucleus	65.58	77.35
Bra019395.1-P	Field mustard	nucleus	62.68	77.23
CDX82909	Canola	cytosol	62.32	76.79
CDX98731	Canola	cytosol	62.32	76.79
CDX79127	Canola	cytosol	61.96	76.34
CDX76384	Canola	cytosol	61.23	75.45
CDY27445	Canola	cytosol	60.87	75.0
Bra013592.1-P	Field mustard	nucleus	60.14	71.86
AT4G22140.3	Thale cress	cytosol	60.87	71.79
GSMUA_Achr10P...	Banana	cytosol	59.42	71.0
GSMUA_Achr9P25510_001	Banana	nucleus	52.17	66.98
AT4G04260.2	Thale cress	cytosol	47.1	63.11
Bra020856.1-P	Field mustard	nucleus	59.06	57.19
GSMUA_Achr2P18690_001	Banana	cytosol	32.97	46.19
CDX94076	Canola	cytosol	13.77	28.79

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G22620_001	EnsemblPlants:GSMUA_Achr8P22620_001	EnsemblPlants:GSMUA_Achr8T22620_001	InterPro:IPR001025
InterPro:IPR013083	UniProt:M0TSR5	PFAM:PF01426	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000295FB97	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Transcription factor [Source:GMGC_GENE;Acc:GSMUA_Achr8G22620_001]

Coordinates

chr8:+:27186265..27192909

Molecular Weight (calculated)

31985.6 Da

IEP (calculated)

8.358

GRAVY (calculated)

-0.513

Length

276 amino acids

Sequence
(BLAST)

001: MAKTKPGKKD LDSYSIKGTN KVVKVGDCVL MRPAESEKPP YVARVEKIEA DHRNNVRVRV RWYYRPEESI GGRRQFHGAK ELFLSDHYDV QSAHTIEGKC
101: TVHSFKNYTK LENVGAEDYF CRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWQFPQIMFL IITVPLCELQ TPQCIWTRSL FYNIRSLQEI
201: QCIYVMMLNV IIVSNKHEFM DRFHPSCMGM TIEQAKKLDH FLCSDCVSEN DAKRSMNGFP TSPVSEAKAE PKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.1 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.