Factsheet for GSMUA_Achr4P11410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08070_001	Banana	nucleus	82.41	82.41
GSMUA_Achr7P02260_001	Banana	nucleus	81.94	81.94
KRH27310	Soybean	nucleus	78.24	78.24
TraesCS5B01G200300.1	Wheat	nucleus	76.85	76.85
KRH26200	Soybean	nucleus	76.39	76.39
TraesCS5D01G208000.1	Wheat	nucleus	76.39	76.39
KRH55144	Soybean	nucleus	76.39	76.39
Os09t0386500-01	Rice	nucleus	75.93	75.93
EER96695	Sorghum	nucleus	75.0	75.0
KRH22009	Soybean	nucleus	78.24	74.45
CDX94078	Canola	cytosol	76.39	73.66
Os08t0421900-01	Rice	nucleus	73.61	73.61
CDX98731	Canola	cytosol	75.93	73.21
Bra019395.1-P	Field mustard	nucleus	75.93	73.21
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	72.69	73.02
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	73.61	72.94
CDX82909	Canola	cytosol	75.46	72.77
CDY27445	Canola	cytosol	75.0	72.32
CDX79127	Canola	cytosol	75.0	72.32
CDX76384	Canola	cytosol	74.54	71.88
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	71.3	71.3
Bra013592.1-P	Field mustard	nucleus	73.15	68.4
AT4G22140.3	Thale cress	cytosol	74.07	68.38
GSMUA_Achr9P25510_001	Banana	nucleus	64.81	65.12
GSMUA_Achr10P...	Banana	cytosol	69.44	64.94
GSMUA_Achr8P22620_001	Banana	cytosol	82.87	64.86
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	61.11	64.39
AT4G04260.2	Thale cress	cytosol	56.02	58.74
KXG25172	Sorghum	mitochondrion, plastid	74.07	58.18
TraesCS5A01G201700.1	Wheat	nucleus, plastid	76.39	57.89
Bra020856.1-P	Field mustard	nucleus	73.15	55.44
HORVU5Hr1G059970.1	Barley	mitochondrion	76.85	51.88
Zm00001d005705_P001	Maize	plastid	50.46	44.13
GSMUA_Achr2P18690_001	Banana	cytosol	39.35	43.15
CDX94076	Canola	cytosol	16.2	26.52

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr4G11410_001	EnsemblPlants:GSMUA_Achr4P11410_001	EnsemblPlants:GSMUA_Achr4T11410_001	InterPro:IPR001025
InterPro:IPR013083	InterPro:IPR019787	UniProt:M0SN06	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI00029602C4	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

Putative Protein polybromo-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G11410_001]

Coordinates

chr4:+:8206052..8210710

Molecular Weight (calculated)

24624.3 Da

IEP (calculated)

8.086

GRAVY (calculated)

-0.696

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKPGKKE LDSYTIKGAN KVVRVGDCVL MRPSDAEKPP YVARVERIEA DHRGSARVRV RWYYRPEESA GGRRQFHGAK ELFLSDHYDV QSARTIEGTC
101: VVHSFKSYTK LEDVGPEDYF CRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPTCMGM TIEQAKKLEH FICSDCSAED AAEKSLKPFP
201: VSPDSELKVE AKRRKK

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.