Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER96695 | Sorghum | nucleus | 94.88 | 94.44 |
| TraesCS5D01G208000.1 | Wheat | nucleus | 86.51 | 86.11 |
| TraesCS5B01G200300.1 | Wheat | nucleus | 86.51 | 86.11 |
| HORVU5Hr1G059960.1 | Barley | cytosol, nucleus, plastid | 86.51 | 85.32 |
| Os09t0386500-01 | Rice | nucleus | 83.72 | 83.33 |
| Zm00001d050330_P003 | Maize | cytosol, nucleus, plastid | 79.07 | 78.7 |
| Solyc05g042030.2.1 | Tomato | nucleus | 73.49 | 74.53 |
| VIT_12s0059g01180.t01 | Wine grape | nucleus | 74.42 | 74.42 |
| GSMUA_Achr4P11410_001 | Banana | nucleus | 73.02 | 72.69 |
| Solyc07g049210.2.1 | Tomato | nucleus | 72.56 | 72.22 |
| KRH27310 | Soybean | nucleus | 72.09 | 71.76 |
| KRH55144 | Soybean | nucleus | 71.16 | 70.83 |
| KRH26200 | Soybean | nucleus | 71.16 | 70.83 |
| PGSC0003DMT400043916 | Potato | nucleus | 73.95 | 69.74 |
| KRH22009 | Soybean | nucleus | 72.09 | 68.28 |
| PGSC0003DMT400001796 | Potato | nucleus | 73.95 | 67.95 |
| Zm00001d032263_P001 | Maize | cytosol, nucleus, plastid | 63.72 | 66.83 |
| CDX98731 | Canola | cytosol | 69.3 | 66.52 |
| CDX94078 | Canola | cytosol | 69.3 | 66.52 |
| Bra019395.1-P | Field mustard | nucleus | 68.37 | 65.62 |
| CDX82909 | Canola | cytosol | 68.37 | 65.62 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 86.51 | 65.26 |
| CDY27445 | Canola | cytosol | 67.91 | 65.18 |
| CDX79127 | Canola | cytosol | 67.91 | 65.18 |
| CDX76384 | Canola | cytosol | 67.44 | 64.73 |
| AT4G22140.3 | Thale cress | cytosol | 69.3 | 63.68 |
| Bra013592.1-P | Field mustard | nucleus | 68.37 | 63.64 |
| Zm00001d019039_P002 | Maize | extracellular | 59.53 | 58.45 |
| HORVU5Hr1G059970.1 | Barley | mitochondrion | 86.51 | 58.12 |
| AT4G04260.2 | Thale cress | cytosol | 55.35 | 57.77 |
| Zm00001d005705_P001 | Maize | plastid | 62.79 | 54.66 |
| Bra020856.1-P | Field mustard | nucleus | 68.84 | 51.93 |
| CDX94076 | Canola | cytosol | 13.95 | 22.73 |
Protein Annotations
| MapMan:12.3.5.2.1 | Gene3D:2.30.30.490 | Gene3D:2.60.120.650 | UniProt:A0A1D6I3R9 | InterPro:BAH_dom | GO:GO:0003674 |
| GO:GO:0003682 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001025 | InterPro:IPR019787 | ProteinID:ONM54786.1 |
| PFAM:PF00628 | PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR12505 |
| PANTHER:PTHR12505:SF39 | SMART:SM00249 | SMART:SM00439 | SUPFAM:SSF57903 | UniParc:UPI0008449F90 | InterPro:Zinc_finger_PHD-type_CS |
| EnsemblPlantsGene:Zm00001d020361 | EnsemblPlants:Zm00001d020361_P001 | EnsemblPlants:Zm00001d020361_T001 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| SEG:seg | : | : | : | : | : |
Description
PHD-transcription factor 30Chromatin remodeling protein EBS
Coordinates
chr7:+:109153947..109156282
Molecular Weight (calculated)
24359.8 Da
IEP (calculated)
8.249
GRAVY (calculated)
-0.668
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTKQGKRD VDAYTIKGTN KVVRVGDCVL MRPADTDNPP YVARVERMES DGRGSVRVRV RWYYRPEEAK GGRRPFHGAK ELFLSDHFDT QSAHTIEGKC
101: IVHSFKSYTK LDNVGPEDFY CRFDYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIEQAKKIDH YMCSDCAKEN GAKRPSNSYS
201: VSPNSDSKFL ISASI
101: IVHSFKSYTK LDNVGPEDFY CRFDYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIEQAKKIDH YMCSDCAKEN GAKRPSNSYS
201: VSPNSDSKFL ISASI
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
Arabidopsis Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.