Factsheet for Zm00001d019039_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0186400-01	Rice	nucleus	93.61	94.04
HORVU2Hr1G054100.1	Barley	nucleus	91.32	91.74
TraesCS2D01G242500.1	Wheat	nucleus	90.87	91.28
TraesCS2B01G257000.1	Wheat	nucleus	90.41	90.83
TraesCS2A01G227100.2	Wheat	nucleus	87.21	85.27
OQU88587	Sorghum	nucleus	90.41	75.0
GSMUA_Achr9P25510_001	Banana	nucleus	69.86	71.16
VIT_03s0038g00160.t01	Wine grape	nucleus	67.58	68.84
Solyc01g110020.2.1	Tomato	nucleus	65.75	66.67
PGSC0003DMT400079501	Potato	nucleus	63.93	66.35
KRH60792	Soybean	nucleus	65.3	66.2
KRH51480	Soybean	nucleus	64.84	65.74
KRG99457	Soybean	cytosol	26.94	61.46
CDY12119	Canola	nucleus	63.47	60.7
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	58.9	59.72
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	58.45	59.53
AT4G39100.1	Thale cress	nucleus	59.82	57.46
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	50.68	54.15
CDX90311	Canola	nucleus	63.47	41.37
Bra010705.1-P	Field mustard	nucleus	63.47	41.37
Zm00001d005705_P001	Maize	plastid	43.38	38.46

Protein Annotations

EntrezGene:100285536	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	UniProt:B6U670	InterPro:BAH_dom
EMBL:EU972735	GO:GO:0000003	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006355	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0035064	GO:GO:0035067	GO:GO:0046872	GO:GO:2000028
InterPro:IPR001025	InterPro:IPR019787	EMBL:KJ727897	ProteinID:ONM52006.1	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000182EC8D	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d019039	EnsemblPlants:Zm00001d019039_P002
EnsemblPlants:Zm00001d019039_T002	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:

Description

PHD-transcription factor 3SHL1

Coordinates

chr7:+:13826135..13833785

Molecular Weight (calculated)

24985.6 Da

IEP (calculated)

8.091

GRAVY (calculated)

-0.662

Length

219 amino acids

Sequence
(BLAST)

001: MAGKSRPPKR ILESYTIKGS DRVIKPGDCV LMRASDASKP PYVARVEAIE AAGSRGTNVR VRVRWYYRPE ESIGGRRPFH GSKEVFLSDH YDVQSADTIE
101: GKCNVHSFRS YTKLDSVNAE DFFCRFEYKS ATGSFVPDRI AVFCKCEMPY NPDDLMIQCE ECSDWFHPAC IGMTIKEAKK LEHFFCQTCT AENGKMVENS
201: HEATAQSEEK PVESKRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.