CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60792	Soybean	nucleus	75.0	33.33
KRH51480	Soybean	nucleus	75.0	33.33
VIT_03s0038g00160.t01	Wine grape	nucleus	70.83	31.63
PGSC0003DMT400079501	Potato	nucleus	64.58	29.38
GSMUA_Achr9P25510_001	Banana	nucleus	64.58	28.84
Solyc01g110020.2.1	Tomato	nucleus	64.58	28.7
AT4G39100.1	Thale cress	nucleus	66.67	28.07
CDY12119	Canola	nucleus	65.62	27.51
Zm00001d019039_P002	Maize	extracellular	61.46	26.94
Os03t0799600-01	Rice	nucleus	60.42	26.61
TraesCS2B01G257000.1	Wheat	nucleus	59.38	26.15
TraesCS2D01G242500.1	Wheat	nucleus	59.38	26.15
HORVU2Hr1G054100.1	Barley	nucleus	59.38	26.15
Os07t0186400-01	Rice	nucleus	59.38	26.15
KRH27310	Soybean	nucleus	58.33	25.93
KRH26200	Soybean	nucleus	58.33	25.93
KRH55144	Soybean	nucleus	57.29	25.46
TraesCS2A01G227100.2	Wheat	nucleus	59.38	25.45
TraesCS5D01G453200.1	Wheat	nucleus	59.38	25.11
TraesCS5A01G445200.2	Wheat	nucleus	59.38	25.11
TraesCS5B01G450300.1	Wheat	nucleus	59.38	24.89
KRH22009	Soybean	nucleus	58.33	24.67
OQU88587	Sorghum	nucleus	61.46	22.35
HORVU5Hr1G106800.2	Barley	nucleus, plastid	59.38	21.11
CDX90311	Canola	nucleus	65.62	18.75
Bra010705.1-P	Field mustard	nucleus	65.62	18.75

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	UniProt:A0A0R0F8E4	EMBL:ACUP02011067	InterPro:BAH_dom	EnsemblPlantsGene:GLYMA_18G146400
GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	InterPro:IPR001025	EnsemblPlants:KRG99457
ProteinID:KRG99457	ProteinID:KRG99457.1	PFAM:PF01426	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39
SMART:SM00439	UniParc:UPI0006EDF408	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:24789498..24791167

Molecular Weight (calculated)

11391.2 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.388

Length

96 amino acids

Sequence
(BLAST)

1: MKIDVRWYYR SEESIGGHRQ FHGSKEVFLS YHFDVQSADT VEARCTVHSS KSYTKLNAIE NDDFFYRFEY NSFTGAFNPD RVAMFIAVPW GWCVLW

Best Arabidopsis Sequence Match ( AT4G39100.2 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWNNNRGS

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.