Factsheet for Solyc01g110020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079501	Potato	nucleus	94.44	96.68
VIT_03s0038g00160.t01	Wine grape	nucleus	87.04	87.44
KRH60792	Soybean	nucleus	81.02	81.02
KRH51480	Soybean	nucleus	80.09	80.09
GSMUA_Achr9P25510_001	Banana	nucleus	67.59	67.91
Solyc05g042030.2.1	Tomato	nucleus	65.28	66.51
Solyc07g049210.2.1	Tomato	nucleus	66.2	66.2
HORVU2Hr1G054100.1	Barley	nucleus	66.67	66.06
Zm00001d019039_P002	Maize	extracellular	66.67	65.75
Os07t0186400-01	Rice	nucleus	66.2	65.6
TraesCS2B01G257000.1	Wheat	nucleus	65.74	65.14
TraesCS2D01G242500.1	Wheat	nucleus	65.74	65.14
KRG99457	Soybean	cytosol	28.7	64.58
AT4G39100.1	Thale cress	nucleus	65.28	61.84
CDY12119	Canola	nucleus	65.28	61.57
TraesCS2A01G227100.2	Wheat	nucleus	63.43	61.16
Os03t0799600-01	Rice	nucleus	60.65	60.09
TraesCS5A01G445200.2	Wheat	nucleus	61.57	58.59
TraesCS5D01G453200.1	Wheat	nucleus	61.57	58.59
Solyc02g081130.1.1	Tomato	nucleus	56.94	58.29
TraesCS5B01G450300.1	Wheat	nucleus	61.57	58.08
OQU88587	Sorghum	nucleus	65.74	53.79
HORVU5Hr1G106800.2	Barley	nucleus, plastid	60.19	48.15
CDX90311	Canola	nucleus	65.74	42.26
Bra010705.1-P	Field mustard	nucleus	65.74	42.26

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	InterPro:BAH_dom	GO:GO:0000785	GO:GO:0000976
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005677	GO:GO:0006139
GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0031507	GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR019787	UniProt:K4B3L5
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	EnsemblPlantsGene:Solyc01g110020.2	EnsemblPlants:Solyc01g110020.2.1
UniParc:UPI0001ED23F8	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:

Description

No Description!

Coordinates

chr1:+:96837246..96843635

Molecular Weight (calculated)

25006.3 Da

IEP (calculated)

8.410

GRAVY (calculated)

-0.867

Length

216 amino acids

Sequence
(BLAST)

001: MAKTRTNRRT LDSYTVKSIN KTVRAGDCVL MRASESSKPS YVARVEKIES DNRGGNVRVH VRWYYRPEES IGGRRQFHGS KELFMSDHRD IQSADTIEGK
101: CTVHTFKSYT KLDAVGNEDF FCRFDYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC SDWFHPTCID MTPEEAKRLD HFFCQNCSSE DQKKLLNSHA
201: TSRHADIKVE SKRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.