Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400043916 | Potato | nucleus | 97.17 | 90.35 |
| VIT_12s0059g01180.t01 | Wine grape | nucleus | 90.57 | 89.3 |
| Solyc07g049210.2.1 | Tomato | nucleus | 90.09 | 88.43 |
| GSMUA_Achr7P02260_001 | Banana | nucleus | 84.91 | 83.33 |
| GSMUA_Achr3P08070_001 | Banana | nucleus | 83.96 | 82.41 |
| TraesCS5D01G208000.1 | Wheat | nucleus | 77.83 | 76.39 |
| TraesCS5B01G200300.1 | Wheat | nucleus | 77.36 | 75.93 |
| EER96695 | Sorghum | nucleus | 76.42 | 75.0 |
| HORVU5Hr1G059960.1 | Barley | cytosol, nucleus, plastid | 75.94 | 73.85 |
| Os08t0421900-01 | Rice | nucleus | 75.0 | 73.61 |
| Os09t0386500-01 | Rice | nucleus | 75.0 | 73.61 |
| Zm00001d020361_P001 | Maize | cytosol, nucleus, plastid | 74.53 | 73.49 |
| Zm00001d050330_P003 | Maize | cytosol, nucleus, plastid | 72.64 | 71.3 |
| GSMUA_Achr8P22620_001 | Banana | cytosol | 86.32 | 66.3 |
| Solyc02g081130.1.1 | Tomato | nucleus | 65.09 | 65.4 |
| Solyc01g110020.2.1 | Tomato | nucleus | 66.51 | 65.28 |
| Zm00001d032263_P001 | Maize | cytosol, nucleus, plastid | 62.26 | 64.39 |
| KXG25172 | Sorghum | mitochondrion, plastid | 75.0 | 57.82 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 77.36 | 57.54 |
| HORVU5Hr1G059970.1 | Barley | mitochondrion | 77.36 | 51.25 |
| Zm00001d005705_P001 | Maize | plastid | 51.89 | 44.53 |
Protein Annotations
| MapMan:12.3.5.2.1 | Gene3D:2.30.30.490 | Gene3D:3.30.40.10 | InterPro:BAH_dom | GO:GO:0000785 | GO:GO:0000976 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005677 | GO:GO:0006139 |
| GO:GO:0006342 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0031507 | GO:GO:0040029 | GO:GO:0046872 | InterPro:IPR001025 | InterPro:IPR013083 | InterPro:IPR019787 |
| UniProt:K4C0I4 | PFAM:PF00628 | PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 |
| PANTHER:PTHR12505 | PANTHER:PTHR12505:SF39 | SMART:SM00249 | SMART:SM00439 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc05g042030.2 |
| EnsemblPlants:Solyc05g042030.2.1 | UniParc:UPI0002766503 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger |
| InterPro:Znf_RING/FYVE/PHD | : | : | : | : | : |
Description
No Description!
Coordinates
chr5:+:54492958..54500690
Molecular Weight (calculated)
24450.1 Da
IEP (calculated)
8.090
GRAVY (calculated)
-0.758
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTKPGKKD LDSYSIKGTN KVVRVGDCVL MRPSDSDKPP YVAKVDKIEA DHRNNVKVRV QWYYRPEESV GGRRQFHGAK ELFLSDHYDF QSAHTIEGKC
101: IVHSFKNYTK LENVGPEDYF CRFDYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPICMGM TIDEAKKLDP FLCSDCSSED DAKRPLNSFH
201: VEPKVELKRR KR
101: IVHSFKNYTK LENVGPEDYF CRFDYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPICMGM TIDEAKKLDP FLCSDCSSED DAKRPLNSFH
201: VEPKVELKRR KR
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR
Arabidopsis Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.