Factsheet for Zm00001d032263_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	73.17	69.44
Os08t0421900-01	Rice	nucleus	70.24	66.67
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	66.83	63.72
VIT_12s0059g01180.t01	Wine grape	nucleus	65.85	62.79
Solyc07g049210.2.1	Tomato	nucleus	65.85	62.5
Solyc05g042030.2.1	Tomato	nucleus	64.39	62.26
GSMUA_Achr4P11410_001	Banana	nucleus	64.39	61.11
KRH27310	Soybean	nucleus	63.9	60.65
KRH26200	Soybean	nucleus	63.41	60.19
KRH55144	Soybean	nucleus	62.93	59.72
PGSC0003DMT400043916	Potato	nucleus	63.9	57.46
KRH22009	Soybean	nucleus	63.41	57.27
PGSC0003DMT400001796	Potato	nucleus	65.37	57.27
CDX94078	Canola	cytosol	61.95	56.7
CDX98731	Canola	cytosol	61.46	56.25
Bra019395.1-P	Field mustard	nucleus	61.46	56.25
CDX82909	Canola	cytosol	60.98	55.8
KXG25172	Sorghum	mitochondrion, plastid	74.63	55.64
CDX79127	Canola	cytosol	60.49	55.36
CDX76384	Canola	cytosol	60.49	55.36
CDY27445	Canola	cytosol	60.0	54.91
AT4G22140.3	Thale cress	cytosol	61.95	54.27
Bra013592.1-P	Field mustard	nucleus	60.98	54.11
Zm00001d019039_P002	Maize	extracellular	54.15	50.68
AT4G04260.2	Thale cress	cytosol	49.27	49.03
Zm00001d005705_P001	Maize	plastid	54.63	45.34
Bra020856.1-P	Field mustard	nucleus	60.0	43.16
CDX94076	Canola	cytosol	4.39	6.82

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	UniProt:A0A1D6KPI8	InterPro:BAH_dom	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	ProteinID:ONM04721.1
PFAM:PF01426	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00439	SUPFAM:SSF57903
UniParc:UPI0008441B53	EnsemblPlantsGene:Zm00001d032263	EnsemblPlants:Zm00001d032263_P001	EnsemblPlants:Zm00001d032263_T001	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD

Description

PHD-transcription factor 2Chromatin remodeling protein EBS

Coordinates

chr1:-:219629525..219630243

Molecular Weight (calculated)

23805.4 Da

IEP (calculated)

7.864

GRAVY (calculated)

-0.498

Length

205 amino acids

Sequence
(BLAST)

001: MVRMKQVKIS VKKDVDSYTI RGTNKVVHGN SPHPRSGCIF SCERYLMLLQ CLCWEVGDCV LMRASDSDKQ PYVARVEKME ADGRGSVRVQ VRWYYRPEES
101: KGGRRQFHGA KELFLSDHFD LQSAHTIEGK CVVHSFKNYT KLDNVGPEDF FSRFEYKAAT GSFTPDRVAV YCKCEMPYNP DDLMVQCEAC KDWYICLNDF
201: QFTFH

Best Arabidopsis Sequence Match ( AT4G04260.2 )
(BLAST)

001: MQVLCAFLGD CVLMRPSDAG KAPYVARVEK IEADARNNVK VHCRWYYCPE ESHGGRRQLH GAKELFLSDH FDVQSAHTIE GKCIVHTFKN YTRLENVGVE
101: DYYCIFDYKA ATGAFTPDRV AVYYKCEMPY NSDELMELLL CHYRVHLACV GVTIEEAKKL EHFVCVECSS DEDGVKRFQN GFASSTTNDL KPSAEKMIDV
201: RASYEL

Arabidopsis Description

Bromo-adjacent homology (BAH) domain-containing protein [Source:TAIR;Acc:AT4G04260]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.