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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_12s0059g01180.t01 Wine grape nucleus 90.28 90.7
Solyc05g042030.2.1 Tomato nucleus 88.43 90.09
PGSC0003DMT400001796 Potato nucleus 93.98 86.75
GSMUA_Achr7P02260_001 Banana nucleus 83.8 83.8
GSMUA_Achr3P08070_001 Banana nucleus 82.41 82.41
TraesCS5D01G208000.1 Wheat nucleus 77.31 77.31
TraesCS5B01G200300.1 Wheat nucleus 76.85 76.85
Os09t0386500-01 Rice nucleus 76.39 76.39
EER96695 Sorghum nucleus 75.46 75.46
Os08t0421900-01 Rice nucleus 74.54 74.54
HORVU5Hr1G059960.1 Barley cytosol, nucleus, plastid 74.07 73.39
Zm00001d050330_P003 Maize cytosol, nucleus, plastid 72.69 72.69
Zm00001d020361_P001 Maize cytosol, nucleus, plastid 72.22 72.56
GSMUA_Achr8P22620_001 Banana cytosol 85.19 66.67
Solyc01g110020.2.1 Tomato nucleus 66.2 66.2
Zm00001d032263_P001 Maize cytosol, nucleus, plastid 62.5 65.85
Solyc02g081130.1.1 Tomato nucleus 63.43 64.93
KXG25172 Sorghum mitochondrion, plastid 75.46 59.27
TraesCS5A01G201700.1 Wheat nucleus, plastid 76.85 58.25
HORVU5Hr1G059970.1 Barley mitochondrion 76.85 51.88
Zm00001d005705_P001 Maize plastid 50.0 43.72
Protein Annotations
MapMan:12.3.5.2.1Gene3D:2.30.30.490Gene3D:3.30.40.10InterPro:BAH_domGO:GO:0000785GO:GO:0000976
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003682GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005654GO:GO:0005677GO:GO:0006139
GO:GO:0006342GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043
GO:GO:0031507GO:GO:0040029GO:GO:0046872InterPro:IPR001025InterPro:IPR013083InterPro:IPR019787
UniProt:K4CF25PFAM:PF00628PFAM:PF01426ScanProsite:PS01359PFscan:PS50016PFscan:PS51038
PANTHER:PTHR12505PANTHER:PTHR12505:SF39SMART:SM00249SMART:SM00439SUPFAM:SSF57903EnsemblPlantsGene:Solyc07g049210.2
EnsemblPlants:Solyc07g049210.2.1UniParc:UPI000276B051InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD:::::
Description
No Description!
Coordinates
chr7:-:59497977..59502695
Molecular Weight (calculated)
24827.3 Da
IEP (calculated)
7.955
GRAVY (calculated)
-0.826
Length
216 amino acids
Sequence
(BLAST)
001: MAKTKPGKKD LDSYSIKGTN KVVRPGDCVL MRPSDSDKPP YVAKVEKLEA DHRNNVKVRV RWYYRPEESI GGRRQFHGAK ELFLSDHFDV QSAHTIEGKC
101: IVHSFKNYTK LENVAPEDYF SRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM SIDEAKTLEH FLCSDCSSED ETKRPLNSFH
201: VSPPDEAKVE SKRRKR
Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR
Arabidopsis Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.