Factsheet for TraesCS5D01G208000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G200300.1	Wheat	nucleus	99.54	99.54
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	96.3	95.41
Os09t0386500-01	Rice	nucleus	90.74	90.74
EER96695	Sorghum	nucleus	87.96	87.96
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	86.11	86.51
VIT_12s0059g01180.t01	Wine grape	nucleus	80.09	80.47
Solyc05g042030.2.1	Tomato	nucleus	76.39	77.83
Solyc07g049210.2.1	Tomato	nucleus	77.31	77.31
KRH27310	Soybean	nucleus	76.39	76.39
GSMUA_Achr4P11410_001	Banana	nucleus	76.39	76.39
KRH26200	Soybean	nucleus	75.46	75.46
TraesCS5A01G201700.1	Wheat	nucleus, plastid	99.54	75.44
KRH55144	Soybean	nucleus	75.0	75.0
PGSC0003DMT400043916	Potato	nucleus	76.39	72.37
KRH22009	Soybean	nucleus	75.93	72.25
CDX98731	Canola	cytosol	73.61	70.98
CDX94078	Canola	cytosol	73.61	70.98
Bra019395.1-P	Field mustard	nucleus	73.15	70.54
CDX82909	Canola	cytosol	72.69	70.09
PGSC0003DMT400001796	Potato	nucleus	75.93	70.09
CDX79127	Canola	cytosol	72.22	69.64
CDX76384	Canola	cytosol	71.3	68.75
CDY27445	Canola	cytosol	70.83	68.3
HORVU5Hr1G059970.1	Barley	mitochondrion	99.54	67.19
AT4G22140.3	Thale cress	cytosol	71.3	65.81
Bra013592.1-P	Field mustard	nucleus	69.91	65.37
TraesCS2D01G242500.1	Wheat	nucleus	61.57	61.01
AT4G04260.2	Thale cress	cytosol	56.94	59.71
TraesCS5D01G453200.1	Wheat	nucleus	58.33	55.51
Bra020856.1-P	Field mustard	nucleus	68.98	52.28
Zm00001d005705_P001	Maize	plastid	56.48	49.39
CDX94076	Canola	cytosol	14.81	24.24

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	InterPro:IPR001025	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS5D01G208000	EnsemblPlants:TraesCS5D01G208000.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	TIGR:cd04714	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5D:+:314382690..314385934

Molecular Weight (calculated)

24597.1 Da

IEP (calculated)

8.679

GRAVY (calculated)

-0.792

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKQGKRD IDSYTIRGTT KVVRVGDCVL MRPSDTDNAP YVARVESLES DGRGSVRVRV RWYYRPEESK GGRRQFHGAK ELFLSDHFDT QSAHTIEGKC
101: IVHSFKNYTK LDNVGPEDFF CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPTCMGM TIEQAKKLDT FLCADCAKEN GAKRPSNSYP
201: SSPSSDSKVE PKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.