CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82909	Canola	cytosol	97.77	97.77
CDX98731	Canola	cytosol	97.77	97.77
CDX79127	Canola	cytosol	97.32	97.32
CDX76384	Canola	cytosol	95.98	95.98
CDY27445	Canola	cytosol	95.54	95.54
AT4G22140.3	Thale cress	cytosol	95.09	91.03
KRH27310	Soybean	nucleus	84.38	87.5
KRH26200	Soybean	nucleus	83.04	86.11
KRH55144	Soybean	nucleus	83.04	86.11
VIT_10s0116g00160.t01	Wine grape	nucleus	80.36	83.72
KRH22009	Soybean	nucleus	84.82	83.7
GSMUA_Achr3P08070_001	Banana	nucleus	78.12	81.02
GSMUA_Achr7P02260_001	Banana	nucleus	78.12	81.02
GSMUA_Achr4P11410_001	Banana	nucleus	73.66	76.39
TraesCS5D01G208000.1	Wheat	nucleus	70.98	73.61
TraesCS5B01G200300.1	Wheat	nucleus	70.54	73.15
Os09t0386500-01	Rice	nucleus	70.09	72.69
PGSC0003DMT400043085	Potato	nucleus	68.3	72.51
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	69.64	72.22
EER96695	Sorghum	nucleus	69.2	71.76
Os08t0421900-01	Rice	nucleus	67.86	70.37
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	68.3	70.18
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	66.52	69.3
Solyc02g081130.1.1	Tomato	nucleus	62.5	66.35
GSMUA_Achr10P...	Banana	cytosol	66.52	64.5
GSMUA_Achr8P22620_001	Banana	cytosol	77.68	63.04
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	56.7	61.95
CDY12119	Canola	nucleus	58.48	57.21
KXG25172	Sorghum	mitochondrion, plastid	69.2	56.36
TraesCS5A01G201700.1	Wheat	nucleus, plastid	70.54	55.44
HORVU5Hr1G059970.1	Barley	mitochondrion	70.54	49.38
GSMUA_Achr2P18690_001	Banana	cytosol	37.95	43.15
Zm00001d005705_P001	Maize	plastid	46.88	42.51
CDX94076	Canola	cytosol	24.11	40.91
CDX90311	Canola	nucleus	58.48	38.99

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	GO:A0A078E3R2	InterPro:BAH_dom	EnsemblPlants:CDX94078
ProteinID:CDX94078	ProteinID:CDX94078.1	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00156983001
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI0004EE3EC0	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaC07g37120D

Coordinates

chrLK031879:-:539889..541958

Molecular Weight (calculated)

25431.2 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.711

Length

224 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKPGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFAAS PADDVKVETK RRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.