Factsheet for VIT_10s0116g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0059g01180.t01	Wine grape	nucleus	90.23	90.23
KRH27310	Soybean	nucleus	86.98	86.57
KRH55144	Soybean	nucleus	85.12	84.72
KRH26200	Soybean	nucleus	85.12	84.72
KRH22009	Soybean	nucleus	85.58	81.06
CDX94078	Canola	cytosol	83.72	80.36
Bra019395.1-P	Field mustard	nucleus	82.79	79.46
CDX82909	Canola	cytosol	82.79	79.46
CDX98731	Canola	cytosol	82.33	79.02
CDX79127	Canola	cytosol	82.33	79.02
CDX76384	Canola	cytosol	81.4	78.12
CDY27445	Canola	cytosol	80.93	77.68
Bra013592.1-P	Field mustard	nucleus	80.0	74.46
AT4G22140.3	Thale cress	cytosol	80.93	74.36
PGSC0003DMT400043085	Potato	nucleus	72.56	73.93
VIT_03s0038g00160.t01	Wine grape	nucleus	69.77	69.77
Solyc02g081130.1.1	Tomato	nucleus	66.98	68.25
AT4G04260.2	Thale cress	cytosol	63.26	66.02
Bra020856.1-P	Field mustard	nucleus	78.6	59.3
CDX94076	Canola	cytosol	17.67	28.79

Protein Annotations

EntrezGene:100854261	wikigene:100854261	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EMBL:AM426541
InterPro:BAH_dom	ProteinID:CAN77921	ProteinID:CAN77921.1	ProteinID:CBI32994	ProteinID:CBI32994.3	UniProt:D7TR71
EMBL:FN596012	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100854261	wikigene:LOC100854261	PFAM:PF00628
PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39
SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	TIGR:TC62711	UniParc:UPI0001BE3BBB	ArrayExpress:VIT_10s0116g00160
EnsemblPlantsGene:VIT_10s0116g00160	EnsemblPlants:VIT_10s0116g00160.t01	unigene:Vvi.21854	RefSeq:XP_003634849	RefSeq:XP_003634849.1	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:

Description

No Description!

Coordinates

chr10_random:-:77087..83420

Molecular Weight (calculated)

24733.1 Da

IEP (calculated)

8.246

GRAVY (calculated)

-0.852

Length

215 amino acids

Sequence
(BLAST)

001: MAKTRPGKRD LDSYTIKGTN KVVRAGDCVL MRPSDTDKPS YVARVEKIEA DNRNNVKVRV RWYYRPEESI GGRRQFHGAK ELFLSDHYDV QSAHTIEGKC
101: TVHSFKNYTK LENVGAEDYY CRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWYHPVCVEM TIEAAKKLDH FLCSDCSDDE AKRSQNAFPT
201: SPTADTKVEP KRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.