Factsheet for PGSC0003DMT400043085

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081130.1.1	Tomato	nucleus	88.63	88.63
VIT_10s0116g00160.t01	Wine grape	nucleus	73.93	72.56
KRH27310	Soybean	nucleus	73.46	71.76
KRH26200	Soybean	nucleus	71.56	69.91
KRH55144	Soybean	nucleus	71.09	69.44
KRH22009	Soybean	nucleus	73.93	68.72
CDX94078	Canola	cytosol	72.51	68.3
CDX98731	Canola	cytosol	71.56	67.41
Bra019395.1-P	Field mustard	nucleus	71.56	67.41
CDX82909	Canola	cytosol	71.09	66.96
CDX76384	Canola	cytosol	71.09	66.96
CDY27445	Canola	cytosol	70.62	66.52
CDX79127	Canola	cytosol	70.62	66.52
PGSC0003DMT400043916	Potato	nucleus	69.67	64.47
AT4G22140.3	Thale cress	cytosol	71.09	64.1
Bra013592.1-P	Field mustard	nucleus	69.67	63.64
PGSC0003DMT400001796	Potato	nucleus	69.67	62.82
PGSC0003DMT400079501	Potato	nucleus	61.61	61.61
AT4G04260.2	Thale cress	cytosol	58.29	59.71
Bra020856.1-P	Field mustard	nucleus	69.67	51.58
CDX94076	Canola	cytosol	14.22	22.73

Protein Annotations

EntrezGene:102582635	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787
UniProt:M1BE20	PFAM:PF00628	PFAM:PF01426	EnsemblPlantsGene:PGSC0003DMG400016712	PGSC:PGSC0003DMG400016712	EnsemblPlants:PGSC0003DMT400043085
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000296609E	RefSeq:XP_006348163.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400016712]

Coordinates

chr2:+:36805703..36811538

Molecular Weight (calculated)

24071.6 Da

IEP (calculated)

8.252

GRAVY (calculated)

-0.642

Length

211 amino acids

Sequence
(BLAST)

001: MAKRPEKRDL PLYIITGTTK VVRVGDCVLM RPSENDKAPY VARVEKIEAG SNNHTYVHVT WYYRPEESMG GRRQFHGSKE LFLSDHHDVQ SAHTIEGKCT
101: VHTFKNYTKL ENVGPDDYYC RFEYKAATGA FMPDRVAVYC KCEMPYNPDD LMVQCEQCKD WYHPACVGLT SEQTKQLADF VCSDCSSSVK KSVNTPVPLS
201: SGKVVPKRQK R

Best Arabidopsis Sequence Match ( AT4G04260.2 )
(BLAST)

001: MQVLCAFLGD CVLMRPSDAG KAPYVARVEK IEADARNNVK VHCRWYYCPE ESHGGRRQLH GAKELFLSDH FDVQSAHTIE GKCIVHTFKN YTRLENVGVE
101: DYYCIFDYKA ATGAFTPDRV AVYYKCEMPY NSDELMELLL CHYRVHLACV GVTIEEAKKL EHFVCVECSS DEDGVKRFQN GFASSTTNDL KPSAEKMIDV
201: RASYEL

Arabidopsis Description

Bromo-adjacent homology (BAH) domain-containing protein [Source:TAIR;Acc:AT4G04260]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.