Factsheet for PGSC0003DMT400079501

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110020.2.1	Tomato	nucleus	96.68	94.44
VIT_03s0038g00160.t01	Wine grape	nucleus	85.78	84.19
KRH60792	Soybean	nucleus	79.62	77.78
KRH51480	Soybean	nucleus	78.67	76.85
GSMUA_Achr9P25510_001	Banana	nucleus	67.77	66.51
KRG99457	Soybean	cytosol	29.38	64.58
Os07t0186400-01	Rice	nucleus	66.35	64.22
HORVU2Hr1G054100.1	Barley	nucleus	66.35	64.22
Zm00001d019039_P002	Maize	extracellular	66.35	63.93
TraesCS2B01G257000.1	Wheat	nucleus	65.88	63.76
TraesCS2D01G242500.1	Wheat	nucleus	65.4	63.3
PGSC0003DMT400043916	Potato	nucleus	66.82	61.84
PGSC0003DMT400043085	Potato	nucleus	61.61	61.61
TraesCS2A01G227100.2	Wheat	nucleus	64.45	60.71
CDY12119	Canola	nucleus	65.4	60.26
AT4G39100.1	Thale cress	nucleus	64.93	60.09
PGSC0003DMT400001796	Potato	nucleus	65.4	58.97
Os03t0799600-01	Rice	nucleus	60.66	58.72
TraesCS5A01G445200.2	Wheat	nucleus	61.14	56.83
TraesCS5D01G453200.1	Wheat	nucleus	61.14	56.83
TraesCS5B01G450300.1	Wheat	nucleus	61.14	56.33
OQU88587	Sorghum	nucleus	65.4	52.27
HORVU5Hr1G106800.2	Barley	nucleus, plastid	59.72	46.67
CDX90311	Canola	nucleus	65.88	41.37
Bra010705.1-P	Field mustard	nucleus	65.88	41.37

Protein Annotations

EntrezGene:102587229	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787
UniProt:M1D1Y1	PFAM:PF00628	PFAM:PF01426	EnsemblPlantsGene:PGSC0003DMG400030955	PGSC:PGSC0003DMG400030955	EnsemblPlants:PGSC0003DMT400079501
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00029613F4	RefSeq:XP_006362024.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:	:

Description

Phd finger transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030955]

Coordinates

chr1:+:86393950..86398907

Molecular Weight (calculated)

24453.7 Da

IEP (calculated)

8.259

GRAVY (calculated)

-0.852

Length

211 amino acids

Sequence
(BLAST)

001: MAKTRTNRRT LDSYTVKSIN KTVRAGDCVL MRASESSKPS YVARVEKIES DNRGGNVRVH VRWYYRPEES IGGRRQFHGS KELFMSDHRD IQSADTIEGK
101: CTVHTFKSYT KLDAVGNEDF FCRFDYNSST GAFNPDRVAV YCKCEMPYNP DDLMVQCEGC SDWFHPTCID MTPEEAKRLD HFFCQNCSSE DQKKLLNSHA
201: DIKVESKRRR R

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.