Factsheet for TraesCS2D01G242500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G054100.1	Barley	nucleus	98.17	98.17
TraesCS2B01G257000.1	Wheat	nucleus	97.71	97.71
TraesCS2A01G227100.2	Wheat	nucleus	95.41	92.86
Os07t0186400-01	Rice	nucleus	91.28	91.28
Zm00001d019039_P002	Maize	extracellular	91.28	90.87
TraesCS5D01G453200.1	Wheat	nucleus	78.44	75.33
GSMUA_Achr9P25510_001	Banana	nucleus	70.18	71.16
OQU88587	Sorghum	nucleus	84.4	69.7
VIT_03s0038g00160.t01	Wine grape	nucleus	66.51	67.44
Solyc01g110020.2.1	Tomato	nucleus	65.14	65.74
PGSC0003DMT400079501	Potato	nucleus	63.3	65.4
KRH60792	Soybean	nucleus	63.3	63.89
KRH51480	Soybean	nucleus	63.3	63.89
TraesCS5D01G208000.1	Wheat	nucleus	61.01	61.57
KRG99457	Soybean	cytosol	26.15	59.38
CDY12119	Canola	nucleus	61.93	58.95
AT4G39100.1	Thale cress	nucleus	58.72	56.14
CDX90311	Canola	nucleus	61.93	40.18
Bra010705.1-P	Field mustard	nucleus	61.93	40.18

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	InterPro:IPR001025	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS2D01G242500	EnsemblPlants:TraesCS2D01G242500.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	TIGR:cd04714	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:270842576..270878447

Molecular Weight (calculated)

24939.4 Da

IEP (calculated)

8.255

GRAVY (calculated)

-0.757

Length

218 amino acids

Sequence
(BLAST)

001: MAKTRPPKKI LESYTIKGSD KVIKPGDCVL MRSADTSKPP YVAKVESIEA AGSRGTNVRV RVRWYYRPEE SIGGRRPFHG SKEVFLSDHY DVQSADTIEG
101: KCNVHSFRSY TKLDSVNAED FFCRFDYKSA SGSFVPDRIA VFCKCEMPYN PDDLMIQCEE CSDWFHPSCI GMTIKEAKKR EHFFCQSCTA ENGKTTENFH
201: EATGQSEEKP VESKRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.