Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G242500.1 | Wheat | nucleus | 92.86 | 95.41 |
| TraesCS2B01G257000.1 | Wheat | nucleus | 92.86 | 95.41 |
| HORVU2Hr1G054100.1 | Barley | nucleus | 91.52 | 94.04 |
| Os07t0186400-01 | Rice | nucleus | 86.61 | 88.99 |
| Zm00001d019039_P002 | Maize | extracellular | 85.27 | 87.21 |
| TraesCS5A01G445200.2 | Wheat | nucleus | 74.55 | 73.57 |
| GSMUA_Achr9P25510_001 | Banana | nucleus | 67.41 | 70.23 |
| OQU88587 | Sorghum | nucleus | 79.02 | 67.05 |
| VIT_03s0038g00160.t01 | Wine grape | nucleus | 62.95 | 65.58 |
| PGSC0003DMT400079501 | Potato | nucleus | 60.71 | 64.45 |
| Solyc01g110020.2.1 | Tomato | nucleus | 61.16 | 63.43 |
| KRH60792 | Soybean | nucleus | 60.71 | 62.96 |
| KRH51480 | Soybean | nucleus | 60.71 | 62.96 |
| KRG99457 | Soybean | cytosol | 25.45 | 59.38 |
| CDY12119 | Canola | nucleus | 59.82 | 58.52 |
| AT4G39100.1 | Thale cress | nucleus | 56.7 | 55.7 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 57.59 | 45.26 |
| CDX90311 | Canola | nucleus | 59.82 | 39.88 |
| Bra010705.1-P | Field mustard | nucleus | 59.82 | 39.88 |
Protein Annotations
| MapMan:12.3.5.2.1 | Gene3D:2.30.30.490 | Gene3D:3.30.40.10 | InterPro:BAH_dom | GO:GO:0003674 | GO:GO:0003682 |
| GO:GO:0005488 | InterPro:IPR001025 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF01426 |
| ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 | PANTHER:PTHR12505 | PANTHER:PTHR12505:SF39 | SMART:SM00249 |
| SMART:SM00439 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS2A01G227100 | EnsemblPlants:TraesCS2A01G227100.2 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | TIGR:cd04714 | : | : |
Description
No Description!
Coordinates
chr2A:-:238009982..238022248
Molecular Weight (calculated)
25531.1 Da
IEP (calculated)
7.657
GRAVY (calculated)
-0.634
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTRPPKKI LEFYTIKGSD KVIKPGDCVL MRSADTSKPP YVAKVESIEA AGSRGTNVRV RVRWYYRPEE SIGGRRPFHG SKEVFLSDHY DVQSADTIEG
101: KCNVHSFRSY TKLDSVNAED FFCRFDYKSA SGSFVPDRIA VFCKCEMPYN PDDLMIQCEE CSDWFHPSCI GMTIKEAKKR EHFFCQSCTA ENGKTTENFH
201: EATAESEEKS NWLSRAGVGL DRRL
101: KCNVHSFRSY TKLDSVNAED FFCRFDYKSA SGSFVPDRIA VFCKCEMPYN PDDLMIQCEE CSDWFHPSCI GMTIKEAKKR EHFFCQSCTA ENGKTTENFH
201: EATAESEEKS NWLSRAGVGL DRRL
001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG
Arabidopsis Description
SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.