Factsheet for TraesCS5A01G201700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G208000.1	Wheat	nucleus	75.44	99.54
TraesCS5B01G200300.1	Wheat	nucleus	75.44	99.54
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	72.98	95.41
Os09t0386500-01	Rice	nucleus	68.42	90.28
EER96695	Sorghum	nucleus	66.32	87.5
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	65.26	86.51
VIT_12s0059g01180.t01	Wine grape	nucleus	60.35	80.0
HORVU5Hr1G059970.1	Barley	mitochondrion	88.42	78.75
Solyc05g042030.2.1	Tomato	nucleus	57.54	77.36
Solyc07g049210.2.1	Tomato	nucleus	58.25	76.85
GSMUA_Achr4P11410_001	Banana	nucleus	57.89	76.39
KRH27310	Soybean	nucleus	57.54	75.93
KRH26200	Soybean	nucleus	56.84	75.0
KRH55144	Soybean	nucleus	56.49	74.54
PGSC0003DMT400043916	Potato	nucleus	57.54	71.93
KRH22009	Soybean	nucleus	57.19	71.81
CDX98731	Canola	cytosol	55.44	70.54
CDX94078	Canola	cytosol	55.44	70.54
Bra019395.1-P	Field mustard	nucleus	55.09	70.09
PGSC0003DMT400001796	Potato	nucleus	57.54	70.09
CDX82909	Canola	cytosol	54.74	69.64
CDX79127	Canola	cytosol	54.39	69.2
CDX76384	Canola	cytosol	53.68	68.3
CDY27445	Canola	cytosol	53.33	67.86
AT4G22140.3	Thale cress	cytosol	54.04	65.81
Bra013592.1-P	Field mustard	nucleus	52.98	65.37
AT4G04260.2	Thale cress	cytosol	43.16	59.71
TraesCS2A01G227100.2	Wheat	nucleus	45.26	57.59
TraesCS5A01G445200.2	Wheat	nucleus	43.86	55.07
Zm00001d005705_P001	Maize	plastid	46.32	53.44
Bra020856.1-P	Field mustard	nucleus	52.28	52.28
CDX94076	Canola	cytosol	11.23	24.24

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	InterPro:BAH_dom	GO:GO:0003674	GO:GO:0003682
GO:GO:0005488	InterPro:IPR001025	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	EnsemblPlantsGene:TraesCS5A01G201700	EnsemblPlants:TraesCS5A01G201700.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	TIGR:cd04714	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5A:+:408180729..408183715

Molecular Weight (calculated)

32165.1 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.644

Length

285 amino acids

Sequence
(BLAST)

001: MPGRHLDSNL HFTFSLLPHE IPRLPLPSRV SSSLGGTELW PTTPLPPPPF PSFPQLSFLG FPPDPTPTSM AKTKQGKRDI DSYTIRGTTK VVRVGDCVLM
101: RPSDTDNAPY VARVESLESD GRGSVRVRVR WYYRPEESKG GRRQFHGAKE LFLSDHFDTQ SAHTIEGKCI VHSFKNYTKL DNVGPEDFFC RFEYKAATGA
201: FTPDRVAVYC KCEMPYNPDD LMVQCEGCKD WFHPTCMGMT IEQAKKLDTF LCADCAKENG AKRPSNSYPS SPSSDSKVEP KRRKW

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.