CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82909	Canola	cytosol	99.55	99.55
CDX94078	Canola	cytosol	97.32	97.32
CDX98731	Canola	cytosol	96.43	96.43
CDX76384	Canola	cytosol	95.09	95.09
CDY27445	Canola	cytosol	94.64	94.64
Bra013592.1-P	Field mustard	nucleus	95.98	93.07
AT4G22140.3	Thale cress	cytosol	94.2	90.17
KRH27310	Soybean	nucleus	83.48	86.57
KRH26200	Soybean	nucleus	82.14	85.19
KRH55144	Soybean	nucleus	82.14	85.19
KRH22009	Soybean	nucleus	83.93	82.82
VIT_10s0116g00160.t01	Wine grape	nucleus	79.02	82.33
GSMUA_Achr3P08070_001	Banana	nucleus	76.79	79.63
GSMUA_Achr7P02260_001	Banana	nucleus	76.79	79.63
GSMUA_Achr4P11410_001	Banana	nucleus	72.32	75.0
Os09t0386500-01	Rice	nucleus	69.64	72.22
TraesCS5D01G208000.1	Wheat	nucleus	69.64	72.22
TraesCS5B01G200300.1	Wheat	nucleus	69.2	71.76
PGSC0003DMT400043085	Potato	nucleus	66.52	70.62
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	67.86	70.37
EER96695	Sorghum	nucleus	67.86	70.37
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	66.96	68.81
Os08t0421900-01	Rice	nucleus	66.07	68.52
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	65.18	67.91
Solyc02g081130.1.1	Tomato	nucleus	61.61	65.4
GSMUA_Achr10P...	Banana	cytosol	65.18	63.2
GSMUA_Achr8P22620_001	Banana	cytosol	76.34	61.96
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	55.36	60.49
CDY12119	Canola	nucleus	57.59	56.33
KXG25172	Sorghum	mitochondrion, plastid	67.86	55.27
TraesCS5A01G201700.1	Wheat	nucleus, plastid	69.2	54.39
HORVU5Hr1G059970.1	Barley	mitochondrion	69.2	48.44
GSMUA_Achr2P18690_001	Banana	cytosol	37.5	42.64
Zm00001d005705_P001	Maize	plastid	45.54	41.3
CDX94076	Canola	cytosol	23.21	39.39
CDX90311	Canola	nucleus	57.59	38.39

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	GO:A0A078CQY5	InterPro:BAH_dom	EnsemblPlants:CDX79127
ProteinID:CDX79127	ProteinID:CDX79127.1	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00131676001
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439
SUPFAM:SSF57903	UniParc:UPI0004EEBAF5	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHD	:	:	:	:	:

Description

BnaA01g11940D

Coordinates

chrLK031816:-:1951079..1953584

Molecular Weight (calculated)

25465.2 Da

IEP (calculated)

8.338

GRAVY (calculated)

-0.737

Length

224 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKTGRKELD SYTIKGTNKI VRAGECVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: GHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPGCVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTAS PADDVKVETK RRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.