CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27310	Soybean	nucleus	92.07	96.76
KRH55144	Soybean	nucleus	89.87	94.44
KRH26200	Soybean	nucleus	89.87	94.44
VIT_10s0116g00160.t01	Wine grape	nucleus	81.06	85.58
CDX94078	Canola	cytosol	83.7	84.82
CDX98731	Canola	cytosol	83.7	84.82
Bra019395.1-P	Field mustard	nucleus	83.26	84.38
CDX79127	Canola	cytosol	82.82	83.93
CDX82909	Canola	cytosol	82.38	83.48
GSMUA_Achr7P02260_001	Banana	nucleus	78.41	82.41
GSMUA_Achr3P08070_001	Banana	nucleus	78.41	82.41
CDX76384	Canola	cytosol	81.06	82.14
CDY27445	Canola	cytosol	80.62	81.7
AT4G22140.3	Thale cress	cytosol	81.06	78.63
GSMUA_Achr4P11410_001	Banana	nucleus	74.45	78.24
Bra013592.1-P	Field mustard	nucleus	79.3	77.92
TraesCS5D01G208000.1	Wheat	nucleus	72.25	75.93
TraesCS5B01G200300.1	Wheat	nucleus	71.81	75.46
Os09t0386500-01	Rice	nucleus	70.93	74.54
EER96695	Sorghum	nucleus	70.48	74.07
PGSC0003DMT400043085	Potato	nucleus	68.72	73.93
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	68.28	72.09
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	69.16	72.02
Os08t0421900-01	Rice	nucleus	68.28	71.76
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	67.84	71.3
AT4G04260.2	Thale cress	cytosol	62.11	68.45
Solyc02g081130.1.1	Tomato	nucleus	62.11	66.82
GSMUA_Achr10P...	Banana	cytosol	67.4	66.23
KRH60792	Soybean	nucleus	63.0	66.2
KRH51480	Soybean	nucleus	62.56	65.74
GSMUA_Achr8P22620_001	Banana	cytosol	77.97	64.13
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	57.27	63.41
Bra020856.1-P	Field mustard	nucleus	78.41	62.46
KRG99457	Soybean	cytosol	24.67	58.33
TraesCS5A01G201700.1	Wheat	nucleus, plastid	71.81	57.19
KXG25172	Sorghum	mitochondrion, plastid	69.16	57.09
HORVU5Hr1G059970.1	Barley	mitochondrion	71.81	50.94
GSMUA_Achr2P18690_001	Banana	cytosol	39.21	45.18
Zm00001d005705_P001	Maize	plastid	48.02	44.13

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EMBL:ACUP02008374	InterPro:BAH_dom	EnsemblPlantsGene:GLYMA_13G272200
GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872	UniProt:I1M331
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EnsemblPlants:KRH22009	ProteinID:KRH22009	ProteinID:KRH22009.1
PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505
PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00023CFDF8	InterPro:Zinc_finger_PHD-type_CS
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:	:

Description

hypothetical protein

Coordinates

chr13:-:37418400..37422227

Molecular Weight (calculated)

26054.0 Da

IEP (calculated)

8.466

GRAVY (calculated)

-0.663

Length

227 amino acids

Sequence
(BLAST)

001: MAKTRPGRKD LDSYTIRGTN KIVRVKGVFF FLCSAAGDCV LMRPSDTSKP PYVARVEKIE QDSRNNVKVR VRWYYRPEES IGGRRQFHGA KELFLSDHYD
101: VQSAHTIEGK CIVHSFKNYT KLENVGAEDY YCRFEYKAAT GAFTPDRVAV YCKCEMPYNP DDLMVQCEGC KDWYHPACVG MTIEEAKKLE HFVCSECSSD
201: DDMKKPHATF SVSPGSDVKV EPKRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.