Factsheet for HORVU5Hr1G059970.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G200300.1	Wheat	nucleus	67.5	100.0
TraesCS5D01G208000.1	Wheat	nucleus	67.19	99.54
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	65.0	95.41
Os09t0386500-01	Rice	nucleus	60.94	90.28
TraesCS5A01G201700.1	Wheat	nucleus, plastid	78.75	88.42
EER96695	Sorghum	nucleus	59.06	87.5
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	58.12	86.51
VIT_12s0059g01180.t01	Wine grape	nucleus	53.75	80.0
Solyc05g042030.2.1	Tomato	nucleus	51.25	77.36
Solyc07g049210.2.1	Tomato	nucleus	51.88	76.85
GSMUA_Achr4P11410_001	Banana	nucleus	51.88	76.85
KRH27310	Soybean	nucleus	51.25	75.93
KRH26200	Soybean	nucleus	50.62	75.0
KRH55144	Soybean	nucleus	50.31	74.54
PGSC0003DMT400043916	Potato	nucleus	51.25	71.93
KRH22009	Soybean	nucleus	50.94	71.81
CDX98731	Canola	cytosol	49.38	70.54
CDX94078	Canola	cytosol	49.38	70.54
Bra019395.1-P	Field mustard	nucleus	49.06	70.09
PGSC0003DMT400001796	Potato	nucleus	51.25	70.09
CDX82909	Canola	cytosol	48.75	69.64
CDX79127	Canola	cytosol	48.44	69.2
CDX76384	Canola	cytosol	47.81	68.3
CDY27445	Canola	cytosol	47.5	67.86
AT4G22140.3	Thale cress	cytosol	48.12	65.81
Bra013592.1-P	Field mustard	nucleus	47.19	65.37
HORVU2Hr1G054100.1	Barley	nucleus	41.88	61.47
AT4G04260.2	Thale cress	cytosol	38.44	59.71
Zm00001d005705_P001	Maize	plastid	41.25	53.44
Bra020856.1-P	Field mustard	nucleus	46.56	52.28
HORVU5Hr1G106800.2	Barley	nucleus, plastid	38.75	45.93
CDX94076	Canola	cytosol	10.0	24.24

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	UniProt:A0A287REF6	InterPro:BAH_dom	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G059970	EnsemblPlants:HORVU5Hr1G059970.1	InterPro:IPR001025
InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000B476622
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:+:468619824..468623818

Molecular Weight (calculated)

35899.5 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.744

Length

320 amino acids

Sequence
(BLAST)

001: WSALSIVLSL RNGKGRTHRP KLQTTEKTPN LLHRTAEDAM TPLGFKHPFH IFTAPPRNPR TTPPSPASSS LVGTEPWQPH PSPPFPSSPP LSFLGFPPDP
101: TPTSMAKTKQ GKRDIDSYTI RGTTKVVRVG DCVLMRPSDT DNAPYVARVE SLESDGRGSV RVRVRWYYRP EESKGGRRQF HGAKELFLSD HFDTQSAHTI
201: EGKCIVHSFK NYTKLDNVGP EDFFCRFEYK AATGAFTPDR VAVYCKCEMP YNPDDLMVQC EGCKDWFHPT CMGMTIEQAK KLDTFLCADC AKENGAKRPS
301: NSYPSSPSSD SKVEPKRRKK

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.