Factsheet for VIT_12s0059g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042030.2.1	Tomato	nucleus	89.3	90.57
Solyc07g049210.2.1	Tomato	nucleus	90.7	90.28
VIT_10s0116g00160.t01	Wine grape	nucleus	90.23	90.23
GSMUA_Achr7P02260_001	Banana	nucleus	90.23	89.81
GSMUA_Achr3P08070_001	Banana	nucleus	89.77	89.35
PGSC0003DMT400043916	Potato	nucleus	88.37	83.33
PGSC0003DMT400001796	Potato	nucleus	89.3	82.05
TraesCS5D01G208000.1	Wheat	nucleus	80.47	80.09
TraesCS5B01G200300.1	Wheat	nucleus	80.0	79.63
Os09t0386500-01	Rice	nucleus	78.14	77.78
EER96695	Sorghum	nucleus	77.67	77.31
Os08t0421900-01	Rice	nucleus	77.21	76.85
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	76.28	75.93
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	76.74	75.69
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	74.42	74.42
GSMUA_Achr8P22620_001	Banana	cytosol	91.63	71.38
VIT_03s0038g00160.t01	Wine grape	nucleus	70.7	70.7
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	62.79	65.85
KXG25172	Sorghum	mitochondrion, plastid	78.14	61.09
TraesCS5A01G201700.1	Wheat	nucleus, plastid	80.0	60.35
HORVU5Hr1G059970.1	Barley	mitochondrion	80.0	53.75
Zm00001d005705_P001	Maize	plastid	51.63	44.94

Protein Annotations

EntrezGene:100253455	wikigene:100253455	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	EMBL:AM432194
InterPro:BAH_dom	ProteinID:CAN75916	ProteinID:CAN75916.1	ProteinID:CBI28849	ProteinID:CBI28849.3	UniProt:D7TEC6
EMBL:FN595765	GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EntrezGene:LOC100253455	wikigene:LOC100253455	PFAM:PF00628
PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39
SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00019846DB	ArrayExpress:VIT_12s0059g01180	EnsemblPlantsGene:VIT_12s0059g01180
EnsemblPlants:VIT_12s0059g01180.t01	RefSeq:XP_002273680	RefSeq:XP_002273680.1	RefSeq:XP_003633285	RefSeq:XP_003633285.1	RefSeq:XP_010657227.1
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

No Description!

Coordinates

chr12:-:6104372..6111363

Molecular Weight (calculated)

24637.2 Da

IEP (calculated)

8.252

GRAVY (calculated)

-0.775

Length

215 amino acids

Sequence
(BLAST)

001: MAKTKPGKKD LDSYTIKGTN KVVRAGDCVL MRPSDSDKPP YVARVEKIEA DHRNNVKVRV RWYYRPEESI GGRRQFHGAK ELFLSDHYDV QSAHTIEGKC
101: IVHSFKNYTK LENVGAEDYF CRFEYKAATG GFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPSCMGM TIEEAKKLDH FLCSDCSSDD DAKRSLNAFP
201: VSPSEAKVEP KRRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.