Factsheet for Zm00001d050330_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0421900-01	Rice	nucleus	88.43	88.43
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	78.7	79.07
VIT_12s0059g01180.t01	Wine grape	nucleus	75.93	76.28
KXG25172	Sorghum	mitochondrion, plastid	93.98	73.82
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	69.44	73.17
Solyc07g049210.2.1	Tomato	nucleus	72.69	72.69
KRH27310	Soybean	nucleus	72.69	72.69
Solyc05g042030.2.1	Tomato	nucleus	71.3	72.64
KRH26200	Soybean	nucleus	71.3	71.3
GSMUA_Achr4P11410_001	Banana	nucleus	71.3	71.3
KRH55144	Soybean	nucleus	70.83	70.83
CDX94078	Canola	cytosol	72.22	69.64
Bra019395.1-P	Field mustard	nucleus	71.76	69.2
CDX98731	Canola	cytosol	71.76	69.2
CDX82909	Canola	cytosol	70.83	68.3
CDX79127	Canola	cytosol	70.37	67.86
KRH22009	Soybean	nucleus	71.3	67.84
CDX76384	Canola	cytosol	69.91	67.41
CDY27445	Canola	cytosol	69.44	66.96
PGSC0003DMT400001796	Potato	nucleus	72.22	66.67
PGSC0003DMT400043916	Potato	nucleus	70.37	66.67
AT4G22140.3	Thale cress	cytosol	70.37	64.96
Bra013592.1-P	Field mustard	nucleus	68.98	64.5
Zm00001d019039_P002	Maize	extracellular	59.72	58.9
AT4G04260.2	Thale cress	cytosol	56.02	58.74
Bra020856.1-P	Field mustard	nucleus	68.06	51.58
Zm00001d005705_P001	Maize	plastid	52.78	46.15
CDX94076	Canola	cytosol	13.43	21.97

Protein Annotations

EntrezGene:100286231	MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	ProteinID:AQK52349.1	UniProt:B6UGC3
InterPro:BAH_dom	EMBL:EU976288	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	EMBL:KJ728243	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000182F4AF	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d050330	EnsemblPlants:Zm00001d050330_P003
EnsemblPlants:Zm00001d050330_T003	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	:

Description

PHD-transcription factor 33DNA binding protein

Coordinates

chr4:+:81873702..81879578

Molecular Weight (calculated)

24713.1 Da

IEP (calculated)

8.254

GRAVY (calculated)

-0.742

Length

216 amino acids

Sequence
(BLAST)

001: MAKTKQGNKD VDSYTIGGTN KVVYVGDCVL MRASDSDNQP YVARVEKMEG DGRGSVRVQV RWYYRPEESK GGRRQFHGAK ELFLSDHFDL QSAHTIEGKC
101: VVHSFKNYTR LDNVGPEDFF CRFEYKAATG SFTPDRVAVY CKCEMPYNPD DLMVQCDACK HWFHPSCVAM TIEQAKKLDH FVCSDCFKEN GSKRLSNAYA
201: TSPNFEPKAE PKRQRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.