Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94078 | Canola | cytosol | 91.03 | 95.09 |
| Bra019395.1-P | Field mustard | nucleus | 90.6 | 94.64 |
| CDX82909 | Canola | cytosol | 90.6 | 94.64 |
| CDX79127 | Canola | cytosol | 90.17 | 94.2 |
| CDX98731 | Canola | cytosol | 90.17 | 94.2 |
| CDX76384 | Canola | cytosol | 89.32 | 93.3 |
| CDY27445 | Canola | cytosol | 88.89 | 92.86 |
| Bra013592.1-P | Field mustard | nucleus | 90.17 | 91.34 |
| KRH27310 | Soybean | nucleus | 78.21 | 84.72 |
| KRH26200 | Soybean | nucleus | 76.5 | 82.87 |
| KRH55144 | Soybean | nucleus | 76.5 | 82.87 |
| KRH22009 | Soybean | nucleus | 78.63 | 81.06 |
| VIT_10s0116g00160.t01 | Wine grape | nucleus | 74.36 | 80.93 |
| GSMUA_Achr3P08070_001 | Banana | nucleus | 71.79 | 77.78 |
| GSMUA_Achr7P02260_001 | Banana | nucleus | 71.79 | 77.78 |
| GSMUA_Achr4P11410_001 | Banana | nucleus | 68.38 | 74.07 |
| AT4G04260.2 | Thale cress | cytosol | 64.96 | 73.79 |
| Bra020856.1-P | Field mustard | nucleus | 89.74 | 73.68 |
| HORVU5Hr1G059960.1 | Barley | cytosol, nucleus, plastid | 66.67 | 71.56 |
| TraesCS5B01G200300.1 | Wheat | nucleus | 65.81 | 71.3 |
| TraesCS5D01G208000.1 | Wheat | nucleus | 65.81 | 71.3 |
| PGSC0003DMT400043085 | Potato | nucleus | 64.1 | 71.09 |
| Zm00001d050330_P003 | Maize | cytosol, nucleus, plastid | 64.96 | 70.37 |
| Os09t0386500-01 | Rice | nucleus | 64.53 | 69.91 |
| Zm00001d020361_P001 | Maize | cytosol, nucleus, plastid | 63.68 | 69.3 |
| EER96695 | Sorghum | nucleus | 63.68 | 68.98 |
| Os08t0421900-01 | Rice | nucleus | 63.25 | 68.52 |
| Solyc02g081130.1.1 | Tomato | nucleus | 58.97 | 65.4 |
| GSMUA_Achr10P... | Banana | cytosol | 62.82 | 63.64 |
| Zm00001d032263_P001 | Maize | cytosol, nucleus, plastid | 54.27 | 61.95 |
| GSMUA_Achr8P22620_001 | Banana | cytosol | 71.79 | 60.87 |
| AT4G39100.1 | Thale cress | nucleus | 55.56 | 57.02 |
| KXG25172 | Sorghum | mitochondrion, plastid | 64.53 | 54.91 |
| TraesCS5A01G201700.1 | Wheat | nucleus, plastid | 65.81 | 54.04 |
| HORVU5Hr1G059970.1 | Barley | mitochondrion | 65.81 | 48.12 |
| GSMUA_Achr2P18690_001 | Banana | cytosol | 36.32 | 43.15 |
| Zm00001d005705_P001 | Maize | plastid | 44.87 | 42.51 |
Protein Annotations
| MapMan:12.3.5.2.1 | Gene3D:2.30.30.490 | Gene3D:3.30.40.10 | EntrezGene:828303 | ProteinID:AEE84562.1 | ProteinID:AEE84563.1 |
| EMBL:AK222203 | ProteinID:ANM67164.1 | ArrayExpress:AT4G22140 | EnsemblPlantsGene:AT4G22140 | RefSeq:AT4G22140 | TAIR:AT4G22140 |
| RefSeq:AT4G22140-TAIR-G | EnsemblPlants:AT4G22140.3 | EMBL:AY142507 | Unigene:At.49737 | InterPro:BAH_dom | ProteinID:CAA18117.1 |
| ProteinID:CAB79169.1 | Symbol:EBS | UniProt:F4JL28 | GO:GO:0000003 | GO:GO:0000785 | GO:GO:0000976 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0005677 |
| GO:GO:0006139 | GO:GO:0006325 | GO:GO:0006342 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009791 |
| GO:GO:0009845 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016569 | GO:GO:0019538 |
| GO:GO:0031507 | GO:GO:0035064 | GO:GO:0035067 | GO:GO:0040029 | GO:GO:0046872 | GO:GO:0048579 |
| GO:GO:2000028 | InterPro:IPR001025 | InterPro:IPR013083 | InterPro:IPR019787 | RefSeq:NP_001031695.1 | RefSeq:NP_001320030.1 |
| RefSeq:NP_193945.2 | PFAM:PF00628 | PFAM:PF01426 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS51038 |
| PANTHER:PTHR12505 | PANTHER:PTHR12505:SF39 | SMART:SM00249 | SMART:SM00439 | SUPFAM:SSF57903 | UniParc:UPI00005DC255 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | : |
Description
EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
Coordinates
chr4:-:11728099..11730509
Molecular Weight (calculated)
26567.6 Da
IEP (calculated)
8.005
GRAVY (calculated)
-0.529
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.