Factsheet for HORVU5Hr1G059960.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

cytosol 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G200300.1	Wheat	nucleus	95.41	96.3
TraesCS5D01G208000.1	Wheat	nucleus	95.41	96.3
Os09t0386500-01	Rice	nucleus	86.7	87.5
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	85.32	86.51
EER96695	Sorghum	nucleus	84.86	85.65
VIT_12s0059g01180.t01	Wine grape	nucleus	75.69	76.74
Solyc05g042030.2.1	Tomato	nucleus	73.85	75.94
Solyc07g049210.2.1	Tomato	nucleus	73.39	74.07
GSMUA_Achr4P11410_001	Banana	nucleus	72.94	73.61
KRH27310	Soybean	nucleus	72.48	73.15
TraesCS5A01G201700.1	Wheat	nucleus, plastid	95.41	72.98
KRH26200	Soybean	nucleus	71.56	72.22
KRH55144	Soybean	nucleus	71.1	71.76
PGSC0003DMT400043916	Potato	nucleus	73.85	70.61
PGSC0003DMT400001796	Potato	nucleus	74.77	69.66
KRH22009	Soybean	nucleus	72.02	69.16
CDX94078	Canola	cytosol	70.18	68.3
CDX98731	Canola	cytosol	70.18	68.3
Bra019395.1-P	Field mustard	nucleus	69.72	67.86
CDX82909	Canola	cytosol	69.27	67.41
CDX79127	Canola	cytosol	68.81	66.96
AT4G22140.3	Thale cress	cytosol	71.56	66.67
CDX76384	Canola	cytosol	67.89	66.07
Bra013592.1-P	Field mustard	nucleus	69.72	65.8
CDY27445	Canola	cytosol	67.43	65.62
HORVU5Hr1G059970.1	Barley	mitochondrion	95.41	65.0
HORVU2Hr1G054100.1	Barley	nucleus	59.63	59.63
AT4G04260.2	Thale cress	cytosol	55.5	58.74
Bra020856.1-P	Field mustard	nucleus	67.89	51.93
Zm00001d005705_P001	Maize	plastid	55.96	49.39
HORVU5Hr1G106800.2	Barley	nucleus, plastid	54.59	44.07
CDX94076	Canola	cytosol	14.22	23.48

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	UniProt:A0A287REL3	InterPro:BAH_dom	GO:GO:0003674
GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:HORVU5Hr1G059960	EnsemblPlants:HORVU5Hr1G059960.1	InterPro:IPR001025
InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038
PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000B465696
InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	SEG:seg	:

Description

No Description!

Coordinates

chrchr5H:-:468553579..468556071

Molecular Weight (calculated)

24676.3 Da

IEP (calculated)

8.036

GRAVY (calculated)

-0.541

Length

218 amino acids

Sequence
(BLAST)

001: MAKTKQGKRD IDSYTIRGTT KVVRVGDCVL MRPSDTDNAP YVARVESLES DGRGSVRVRV RWYYRPEESK GGRRQFHGAK ELFLSDHFDT QSAHTIEGKC
101: IVHSFKNYTK LDNVGPEDFF CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK DWFHPTCMGM TIEQAKKLDT FLCADCAKEN GAKRPSNSYP
201: SSPSSDSKIA LCLYLILL

Best Arabidopsis Sequence Match ( AT4G22140.1 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.