CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27445	Canola	cytosol	99.55	99.55
CDX94078	Canola	cytosol	95.98	95.98
CDX82909	Canola	cytosol	95.54	95.54
CDX98731	Canola	cytosol	95.54	95.54
CDX79127	Canola	cytosol	95.09	95.09
AT4G22140.3	Thale cress	cytosol	93.3	89.32
KRH27310	Soybean	nucleus	81.7	84.72
KRH26200	Soybean	nucleus	80.36	83.33
KRH55144	Soybean	nucleus	80.36	83.33
VIT_10s0116g00160.t01	Wine grape	nucleus	78.12	81.4
KRH22009	Soybean	nucleus	82.14	81.06
GSMUA_Achr7P02260_001	Banana	nucleus	75.89	78.7
GSMUA_Achr3P08070_001	Banana	nucleus	75.89	78.7
Bra020856.1-P	Field mustard	nucleus	97.32	76.49
GSMUA_Achr4P11410_001	Banana	nucleus	71.88	74.54
TraesCS5D01G208000.1	Wheat	nucleus	68.75	71.3
PGSC0003DMT400043085	Potato	nucleus	66.96	71.09
TraesCS5B01G200300.1	Wheat	nucleus	68.3	70.83
Os09t0386500-01	Rice	nucleus	67.86	70.37
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	67.41	69.91
EER96695	Sorghum	nucleus	67.41	69.91
Os08t0421900-01	Rice	nucleus	65.62	68.06
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	66.07	67.89
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	64.73	67.44
Solyc02g081130.1.1	Tomato	nucleus	61.61	65.4
GSMUA_Achr10P...	Banana	cytosol	65.18	63.2
GSMUA_Achr8P22620_001	Banana	cytosol	75.45	61.23
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	55.36	60.49
CDY12119	Canola	nucleus	56.7	55.46
KXG25172	Sorghum	mitochondrion, plastid	66.96	54.55
TraesCS5A01G201700.1	Wheat	nucleus, plastid	68.3	53.68
HORVU5Hr1G059970.1	Barley	mitochondrion	68.3	47.81
GSMUA_Achr2P18690_001	Banana	cytosol	37.5	42.64
Zm00001d005705_P001	Maize	plastid	46.43	42.11
CDX94076	Canola	cytosol	22.32	37.88
CDX90311	Canola	nucleus	56.7	37.8

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	GO:A0A078CJZ8	InterPro:BAH_dom	EnsemblPlants:CDX76384
ProteinID:CDX76384	ProteinID:CDX76384.1	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00126774001
InterPro:IPR001025	InterPro:IPR019787	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903
UniParc:UPI0004EEFD65	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:

Description

BnaA08g10160D

Coordinates

chrLK031807:+:829487..831369

Molecular Weight (calculated)

25440.1 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.723

Length

224 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKTGRKELD TYTIKGTNKV VRAGDYVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCDGCKDW YHPACVGMTT EEAKLLDHFA CAECSSDDDV
201: KKSQNGFTAS PADDVKVEAK RRKR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.