Factsheet for Bra020856.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76384	Canola	cytosol	76.49	97.32
CDY27445	Canola	cytosol	76.14	96.88
Bra019395.1-P	Field mustard	nucleus	72.98	92.86
AT4G22140.3	Thale cress	cytosol	73.68	89.74
Bra013592.1-P	Field mustard	nucleus	72.63	89.61
KRH27310	Soybean	nucleus	62.11	81.94
KRH55144	Soybean	nucleus	61.4	81.02
KRH26200	Soybean	nucleus	61.05	80.56
VIT_10s0116g00160.t01	Wine grape	nucleus	59.3	78.6
KRH22009	Soybean	nucleus	62.46	78.41
GSMUA_Achr3P08070_001	Banana	nucleus	57.54	75.93
GSMUA_Achr7P02260_001	Banana	nucleus	57.54	75.93
GSMUA_Achr4P11410_001	Banana	nucleus	55.44	73.15
PGSC0003DMT400043085	Potato	nucleus	51.58	69.67
TraesCS5D01G208000.1	Wheat	nucleus	52.28	68.98
TraesCS5B01G200300.1	Wheat	nucleus	52.28	68.98
Os09t0386500-01	Rice	nucleus	52.28	68.98
Zm00001d020361_P001	Maize	cytosol, nucleus, plastid	51.93	68.84
Zm00001d050330_P003	Maize	cytosol, nucleus, plastid	51.58	68.06
EER96695	Sorghum	nucleus	51.58	68.06
HORVU5Hr1G059960.1	Barley	cytosol, nucleus, plastid	51.93	67.89
Os08t0421900-01	Rice	nucleus	50.18	66.2
Solyc02g081130.1.1	Tomato	nucleus	47.72	64.45
GSMUA_Achr10P...	Banana	cytosol	50.53	62.34
Zm00001d032263_P001	Maize	cytosol, nucleus, plastid	43.16	60.0
GSMUA_Achr8P22620_001	Banana	cytosol	57.19	59.06
KXG25172	Sorghum	mitochondrion, plastid	51.23	53.09
TraesCS5A01G201700.1	Wheat	nucleus, plastid	52.28	52.28
HORVU5Hr1G059970.1	Barley	mitochondrion	52.28	46.56
GSMUA_Achr2P18690_001	Banana	cytosol	29.47	42.64
Zm00001d005705_P001	Maize	plastid	36.84	42.51
Bra010705.1-P	Field mustard	nucleus	44.21	37.5

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	InterPro:BAH_dom	EnsemblPlantsGene:Bra020856	EnsemblPlants:Bra020856.1
EnsemblPlants:Bra020856.1-P	GO:GO:0003674	GO:GO:0003682	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR019787	UniProt:M4DWG2	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359	PFscan:PS50016
PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249	SMART:SM00439	SUPFAM:SSF57903
UniParc:UPI0002545E03	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:

Description

AT4G22140 (E=5e-126) | DNA binding / protein binding / zinc ion binding

Coordinates

chrA08:-:11666096..11667800

Molecular Weight (calculated)

31897.2 Da

IEP (calculated)

7.874

GRAVY (calculated)

-0.224

Length

285 amino acids

Sequence
(BLAST)

001: MAKTRPGVPS KIKTGRKELD TYTIKGTNKV VRAGDYVLMR PSDAGKPPYV ARVERIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCDGCKDW YHPACVGMTT EEAKLLDHFA CAECSSDDDV
201: KKSQNGFTAS PADDVKVRCI SLVIACVNAL LVYNASFCRR SVCNLVLSVQ FDGALLSVKD TILGSVWICY LLNVAPVLTA KHSIC

Best Arabidopsis Sequence Match ( AT4G22140.1 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVRLS LFSHLLYRCS ITYL

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.