Factsheet for Bra010705.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90311	Canola	nucleus	100.0	100.0
AT4G39100.1	Thale cress	nucleus	56.25	82.89
KRH60792	Soybean	nucleus	43.45	67.59
KRH51480	Soybean	nucleus	43.45	67.59
VIT_03s0038g00160.t01	Wine grape	nucleus	42.26	66.05
PGSC0003DMT400079501	Potato	nucleus	41.37	65.88
Solyc01g110020.2.1	Tomato	nucleus	42.26	65.74
KRG99457	Soybean	cytosol	18.75	65.62
Os07t0186400-01	Rice	nucleus	41.96	64.68
Zm00001d019039_P002	Maize	extracellular	41.37	63.47
TraesCS2B01G257000.1	Wheat	nucleus	40.48	62.39
TraesCS2D01G242500.1	Wheat	nucleus	40.18	61.93
HORVU2Hr1G054100.1	Barley	nucleus	40.18	61.93
GSMUA_Achr9P25510_001	Banana	nucleus	38.99	60.93
TraesCS2A01G227100.2	Wheat	nucleus	39.88	59.82
Bra019395.1-P	Field mustard	nucleus	38.99	58.48
Os03t0799600-01	Rice	nucleus	37.8	58.26
TraesCS5A01G445200.2	Wheat	nucleus	37.8	55.95
TraesCS5D01G453200.1	Wheat	nucleus	37.8	55.95
TraesCS5B01G450300.1	Wheat	nucleus	37.8	55.46
Bra013592.1-P	Field mustard	nucleus	38.1	55.41
OQU88587	Sorghum	nucleus	39.88	50.76
HORVU5Hr1G106800.2	Barley	nucleus, plastid	37.5	46.67
Bra020856.1-P	Field mustard	nucleus	37.5	44.21

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:3.30.40.10	InterPro:BAH_dom	EnsemblPlantsGene:Bra010705	EnsemblPlants:Bra010705.1
EnsemblPlants:Bra010705.1-P	GO:GO:0000003	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003682	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006355	GO:GO:0006464	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0035064	GO:GO:0035067	GO:GO:0046872	GO:GO:2000028
InterPro:IPR001025	InterPro:IPR013083	InterPro:IPR019787	UniProt:M4D2K5	PFAM:PF00628	PFAM:PF01426
ScanProsite:PS01359	PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI000254696E	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD
InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT4G39100 (E=4e-118) SHL1 | SHL1 (short life); transcription factor/ zinc-mediated transcriptional activator

Coordinates

chrA08:+:16060935..16063749

Molecular Weight (calculated)

38145.9 Da

IEP (calculated)

8.816

GRAVY (calculated)

-0.790

Length

336 amino acids

Sequence
(BLAST)

001: MENISGLMAF DMGELRNNLP KKRGLSRFYS GKARSYVCIF DVKCLEDLKK PTQLLDIDDD DVAYTKRKKK NKQSSSSSFS AAVNSNVNYQ NYPCRRVSSS
101: THCSSPCMPK QKAQKKQLKS YKLKHINRTI QEGDAVLMRS SEPGKPSYVA RVEAIEATDA RGSNARVRVR WYYRPEESMG GRRQFHGAKE VFLSDHFDLQ
201: SADTIEGKCK VHSFSSYTKL SSVGNDDFFC RFEYNSATGA FIPDRVAVFC KCEMPYNPDD LMVQCEECSE WFHPSCIGTT IEAAKKLDHF YCEECSPEQQ
301: DLDNSNSTSK TTDAKVNTKR SLEVSKTRNK HAKRSG

Best Arabidopsis Sequence Match ( AT4G39100.1 )
(BLAST)

001: MPKQKAPRKQ LKSYKLKHIN KSIQEGDAVL MRSSEPGKPS YVARVEAIET DARGSHAKVR VRWYYRPEES IGGRRQFHGA KEVFLSDHFD FQSADTIEGK
101: CKVHSFSSYT KLDSVGNDDF FCRFEYNSTT GAFDPDRVTV FCKCEMPYNP DDLMVQCEEC SEWFHPSCIG TTIEEAKKPD NFYCEECSPQ QQNLHNSNST
201: SNNRDAKVNG KRSLEVTKSK NKHTKRPG

Arabidopsis Description

SHLSHL1 [Source:UniProtKB/TrEMBL;Acc:A0A178UWF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.