Factsheet for Os03t0799600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0186400-01	Rice	nucleus	75.69	75.69
TraesCS5D01G453200.1	Wheat	nucleus	73.85	70.93
TraesCS5A01G445200.2	Wheat	nucleus	73.85	70.93
TraesCS5B01G450300.1	Wheat	nucleus	73.85	70.31
GSMUA_Achr9P25510_001	Banana	nucleus	66.51	67.44
VIT_03s0038g00160.t01	Wine grape	nucleus	62.39	63.26
KRH51480	Soybean	nucleus	61.93	62.5
KRH60792	Soybean	nucleus	61.47	62.04
PGSC0003DMT400079501	Potato	nucleus	58.72	60.66
Solyc01g110020.2.1	Tomato	nucleus	60.09	60.65
KRG99457	Soybean	cytosol	26.61	60.42
Os09t0386500-01	Rice	nucleus	59.63	60.19
Os08t0421900-01	Rice	nucleus	59.17	59.72
HORVU5Hr1G106800.2	Barley	nucleus, plastid	72.48	58.52
CDY12119	Canola	nucleus	57.8	55.02
AT4G39100.1	Thale cress	nucleus	54.13	51.75
CDX90311	Canola	nucleus	58.26	37.8
Bra010705.1-P	Field mustard	nucleus	58.26	37.8

Protein Annotations

MapMan:12.3.5.2.1	Gene3D:2.30.30.490	Gene3D:2.60.120.650	EntrezGene:4334444	ProteinID:AAO37525.1	ProteinID:ABF99375.1
EMBL:AK072569	EMBL:AK104450	ProteinID:BAF13492.1	InterPro:BAH_dom	ProteinID:BAS86877.1	ProteinID:EEE60106.1
GO:GO:0000785	GO:GO:0000976	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003682
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005677	GO:GO:0006139	GO:GO:0006342	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0031507	GO:GO:0040029	GO:GO:0046872	InterPro:IPR001025
InterPro:IPR019787	EnsemblPlantsGene:Os03g0799600	EnsemblPlants:Os03t0799600-01	PFAM:PF00628	PFAM:PF01426	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS51038	PANTHER:PTHR12505	PANTHER:PTHR12505:SF39	UniProt:Q851Q5	SMART:SM00249
SMART:SM00439	SUPFAM:SSF57903	UniParc:UPI00000027F7	RefSeq:XP_015632848.1	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	:	:	:	:

Description

Similar to ES43 like protein. (Os03t0799600-01);Similar to ES43 like protein. (Os03t0799600-02)

Coordinates

chr3:+:33328277..33333234

Molecular Weight (calculated)

25048.7 Da

IEP (calculated)

8.467

GRAVY (calculated)

-0.712

Length

218 amino acids

Sequence
(BLAST)

001: MAKTRQPQKR VLESFTIKGP DGVIKPGDTV LMMAPDSSKK PYVARVEEIE ATGPQASQVK IKVRWYYRPE ESIGGRRPFH GSKEVFLSDH YDSQSADTIE
101: GKCYVHTFRD YTKLRSVSAE DFFCRFEYKS ATGSFVPDRI AVFCKCEMPY NPDNLMIQCE DCSDWFHPSC VEITIKEAKK LEHFYCKSCI AENGKDLQKS
201: NGATVQSEEK VQSKRRRR

Best Arabidopsis Sequence Match ( AT4G22140.2 )
(BLAST)

001: MAKTRPGVAS KIKTGRKELD SYTIKGTNKV VRAGDCVLMR PSDAGKPPYV ARVEKIEADA RNNVKVHCRW YYRPEESLGG RRQFHGAKEL FLSDHFDVQS
101: AHTIEGKCIV HTFKNYTRLE NVGAEDYYCR FEYKAATGAF TPDRVAVYCK CEMPYNPDDL MVQCEGCKDW YHPACVGMTI EEAKKLDHFV CAECSSDDDV
201: KKSQNGFTSS PADDVKVETK RRKR

Arabidopsis Description

EBSChromatin remodeling protein EBS [Source:UniProtKB/Swiss-Prot;Acc:F4JL28]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.